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[188031_s_at]

Description K07E3.8 /REP_DB=WormBase Gene ID /WP=CE21027 /GEN=vem-1 /TR=Q9TY05 /GB=AAD31555.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 47      4grp_highest_8_8 > 04      4grp_high_8_8 > 37      6grp_highest_nonorm > 57      6grp_total > 45      4grp_total > 35      6grp_highest_sub > Cu      6grp_cgc > 17      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 343
1 2 3 4 range
A 2163
(-3)
P 		2505.7
(3)
P 		2237.7
(-1.7)
P 		2471.3
(2.4)
P 		343
B 2229.8
(-1)
P 		2320.4
(3)
P 		2236.7
(-0.7)
P 		2185.7
(-3)
P 		135
C 2365.2
(3)
P 		2321.5
(0.7)
P 		2325.2
(0.9)
P 		2250.5
(-3)
P 		115
avr 2252.7
(-3) 		2382.5
(3) 		2266.5
(-2.4) 		2302.5
(-0.7) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1080
1 2 3 4 5 6 range
A 2708.7
(3)
P 		2029.1
(-1.3)
P 		2397.4
(1)
P 		1770
(-3)
P 		2105.2
(-0.9)
P 		2335.9
(0.6)
P 		939
B 2484.7
(1.5)
P 		2341.6
(0.3)
P 		2473.9
(1.4)
P 		1925.5
(-3)
P 		2049.1
(-2)
P 		2673.5
(3)
P 		748
C 2082.5
(-1.2)
P 		2317.5
(0.1)
P 		2112
(-1)
P 		1899.5
(-2.2)
P 		1755
(-3)
P 		2834.7
(3)
P 		1080
avr 2425.3
(1.5) 		2229.4
(-0.1) 		2327.8
(0.7) 		1865
(-3) 		1969.8
(-2.2) 		2614.7
(3) 		750
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 449
1 2 3 4 range
A 787.6
(3)
P 		543.9
(-0.4)
P 		585
(0.1)
P 		361.7
(-3)
P 		426
B 711.1
(3)
P 		573.1
(-0.4)
P 		518.3
(-1.7)
P 		465.8
(-3)
P 		245
C 783
(2.6)
P 		667.4
(1)
P 		810.4
(3)
P 		379.5
(-3)
P 		431
avr 760.6
(3) 		594.8
(0.2) 		637.9
(0.9) 		402.3
(-3) 		358

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 615
1 2 3 4 5 6 range
A 499.3
(-1.9)
P 		721.7
(3)
P 		522.1
(-1.4)
P 		448.9
(-3)
P 		635.2
(1.1)
P 		568.7
(-0.4)
P 		273
B 864.6
(1.4)
P 		779.4
(0.3)
P 		600.7
(-1.9)
P 		510
(-3)
P 		832.5
(1)
P 		996.9
(3)
P 		487
C 771.9
(1.1)
P 		707.1
(0.4)
P 		537.5
(-1.4)
P 		382
(-3)
P 		567.9
(-1)
P 		948.9
(3)
P 		567
avr 711.9
(1.1) 		736.1
(1.4) 		553.4
(-1.4) 		447
(-3) 		678.5
(0.6) 		838.2
(3) 		391
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188031_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16297
Sequence Type Exemplar sequence
Representative Public ID K07E3.8 NCBI
Target Description K07E3.8 /REP_DB=WormBase Gene ID /WP=CE21027 /GEN=vem-1 /TR=Q9TY05 /GB=AAD31555.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029599(10), NM_001029598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029599 NCBI Caenorhabditis elegans VEMA (mammalian ventral midline antigen) related family member (vem-1) (vem-1) mRNA, complete cds. 10/11 None
NM_001029598 NCBI Caenorhabditis elegans VEMA (mammalian ventral midline antigen) related family member (vem-1) (vem-1) mRNA, complete cds. 11/11 None
SNAP00000041515 ENSEMBL cdna:SNAP chromosome:CEL140:X:8087675:8088501:-1 10/11 None
GENEFINDER00000041524 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8087675:8088501:-1 10/11 None
K07E3.8b ENSEMBL cdna:known chromosome:CEL140:X:8087561:8088516:-1 gene:K07E3.8 10/11 None
K07E3.8a ENSEMBL cdna:known chromosome:CEL140:X:8087675:8089618:-1 gene:K07E3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8087673-8089270(-) 100.0 100.0
Public Domain and Genome References
Ensembl K07E3.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD31555 Vema (mammalian ventral midline antigen) related protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024769.1| VEMA (mammalian ventral midline antigen) related family member (vem-1) [Caenorhabditis elegans] 1.0E-95
blast H89582 protein K07E3.6 [imported] - Caenorhabditis elegans 4.0E-87
blast AAD31555 Vema (mammalian ventral midline antigen) related protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024769.1| VEMA (mammalian ventral midline antigen) related family member (vem-1) [Caenorhabditis elegans] 1.0E-86
blast AAP82646 Vema (mammalian ventral midline antigen) related protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024770.1| VEMA (mammalian ventral midline antigen) related family member (vem-1) [Caenorhabditis elegans] 1.0E-86
blast H89582 protein K07E3.6 [imported] - Caenorhabditis elegans 1.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR001199 EMBL-EBI Cytochrome b5 8.0E-18
Pfam IPR001199 EMBL-EBI Cytochrome b5 8.0E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024770.1 1 10-28
NP_001024769.1 1 20-42
K07E3.8b 1 10-28
K07E3.8a 1 20-42
SNAP00000041515 1 10-28
GENEFINDER00000041524 1 10-28
Sequence
Target Sequence 
>C. ELEGANS:188031_S_AT
tactgtttctgttacttttttgcataaatcatttttcacaatggatcttagctcttggtt
tgaattcacaatgtacgacgcggtcttccttgtcgtcgttctcggattctttttctactg
gctcaccagatccgagcaaccgctcccagctccaccaaaagaactcgccccattgccaat
gtccgatatgacagttgaagagctgcgcaagtacgatggtgtcaaaaatgagcacattct
gtttggactcaacggaactatctatgacgtgactcgcggaaaaggattttacggaccagg
aaaagcctacggtacacttgccgggcatgacgctacccgcgcgcttggaaccatggacca
gaatgctgtttctagcgagtgggatgatcatactggaatctctgctgacgagcaggaaac
cgccaacgaatgggagacacagttcaaattcaagtacttgactgttggacgtctggtaaa
gaatagctcggaaaaagcagattatggaaatagaaaatcgtttgttcgtggagccgagtc
tttggattcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGTTTCTGTTACTTTTTTGCAT 159 647 18 Antisense
TCACAATGTACGACGCGGTCTTCCT 286 627 83 Antisense
TTTTCTACTGGCTCACCAGATCCGA 3 675 128 Antisense
GAGCTGCGCAAGTACGATGGTGTCA 178 387 217 Antisense
AGCACATTCTGTTTGGACTCAACGG 64 77 248 Antisense
GGAACTATCTATGACGTGACTCGCG 543 529 271 Antisense
GAAAAGCCTACGGTACACTTGCCGG 24 355 317 Antisense
TACACTTGCCGGGCATGACGCTACC 83 641 330 Antisense
GATCATACTGGAATCTCTGCTGACG 633 419 403 Antisense
GACGAGCAGGAAACCGCCAACGAAT 468 379 424 Antisense
GTGGAGCCGAGTCTTTGGATTCGAT 205 489 545 Antisense
Sequence Source Affymetrix Proprietary Database