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[188030_s_at]

Description ZK525.1_rc /REP_DB=WormBase Gene ID /WP=CE16731 /TR=O46023 /GB=CAB05022.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 21      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 42      6grp_total > 31      4grp_total > 12      6grp_highest_sub > 01_02_03      6grp_cgc > 71      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1224
1 2 3 4 range
A 760.4
(-1.3)
P 		624.4
(-2.1)
P 		458.9
(-3)
P 		1547.2
(3)
P 		1088
B 695.7
(-0.3)
P 		465.8
(-2)
P 		322.8
(-3)
P 		1140.6
(3)
P 		818
C 641.5
(-0.8)
P 		448.6
(-2.2)
P 		335.5
(-3)
P 		1185.7
(3)
P 		850
avr 699.2
(-0.9) 		512.9
(-2.1) 		372.4
(-3) 		1291.2
(3) 		919

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1373
1 2 3 4 5 6 range
A 1157.2
(1.3)
P 		339.8
(-2.5)
P 		1514.6
(3)
P 		314.2
(-2.6)
P 		834.3
(-0.2)
P 		234.1
(-3)
P 		1281
B 1534.7
(3)
P 		1250.8
(1.2)
P 		1455.3
(2.5)
P 		1476.2
(2.6)
P 		570.1
(-3)
P 		791.4
(-1.6)
P 		965
C 204.2
(-3)
P 		1577
(3)
P 		272.4
(-2.7)
P 		974
(0.4)
P 		276.3
(-2.7)
P 		646
(-1.1)
P 		1373
avr 965.4
(1.7) 		1055.9
(2.7) 		1080.8
(3) 		921.5
(1.2) 		560.2
(-3) 		557.2
(-3) 		524
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 276.9
(3)
P 		135.5
(-2.4)
P 		120
(-3)
P 		226.5
(1.1)
P 		157
B 221.9
(2.2)
P 		115
(-1.6)
P 		74.8
(-3)
P 		243.1
(3)
P 		168
C 212.4
(3)
P 		129
(-2.2)
P 		116.9
(-3)
P 		199.9
(2.2)
P 		96
avr 237.1
(3) 		126.5
(-2) 		103.9
(-3) 		223.2
(2.4) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 477
1 2 3 4 5 6 range
A 213.3
(0.4)
P 		120.9
(-1.6)
P 		329.8
(3)
P 		79.7
(-2.5)
P 		251.8
(1.3)
P 		57
(-3)
P 		273
B 534
(3)
P 		416.3
(0.7)
P 		353.4
(-0.6)
P 		391
(0.2)
P 		231.6
(-3)
P 		295.1
(-1.7)
P 		302
C 75.7
(-2.9)
P 		481.2
(3)
P 		69.3
(-3)
P 		195.9
(-1.2)
P 		89.4
(-2.7)
P 		216.3
(-0.9)
P 		412
avr 274.3
(0.4) 		339.5
(3) 		250.8
(-0.5) 		222.2
(-1.7) 		190.9
(-2.9) 		189.5
(-3) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188030_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28124
Sequence Type Exemplar sequence
Representative Public ID ZK525.1 NCBI
Target Description ZK525.1_rc /REP_DB=WormBase Gene ID /WP=CE16731 /TR=O46023 /GB=CAB05022.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) ZK525.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK525.1 ZK525.1_rc /REP_DB=WormBase Gene ID /WP=CE16731 /TR=O46023 /GB=CAB05022.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /REVCOMP None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067419 11/11 Negative Strand Matching Probes A 
SNAP00000034992 9/11 Negative Strand Matching Probes None
GENEFINDER00000034996 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13663059-13667315(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK525.1
Sequence
Target Sequence 
>C. ELEGANS:188030_S_AT
cttcagcagcaggtgccacgtggaatgatgatcgctttccaaaacggagaggtccagatg
gtccacgtcgttttccgaatcgaagtggtccctggggtccgcctttctttacgtaattgg
aaaagtagtccaaatcaacagccactgggattgttccgaccgaattgtcgtcgtaatctg
caagtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCAGCAGCAGGTGCCACGTGGAA 620 221 36 Antisense
GCCACGTGGAATGATGATCGCTTTC 511 279 50 Antisense
GATCGCTTTCCAAAACGGAGAGGTC 129 381 65 Antisense
ACGGAGAGGTCCAGATGGTCCACGT 128 95 79 Antisense
TCCACGTCGTTTTCCGAATCGAAGT 98 587 97 Antisense
TCCGAATCGAAGTGGTCCCTGGGGT 237 385 109 Antisense
AAGTAGTCCAAATCAACAGCCACTG 395 157 158 Antisense
CAACAGCCACTGGGATTGTTCCGAC 579 189 171 Antisense
CTGGGATTGTTCCGACCGAATTGTC 323 235 180 Antisense
GACCGAATTGTCGTCGTAATCTGCA 136 383 193 Antisense
AATTGTCGTCGTAATCTGCAAGTGT 205 179 198 Antisense
Sequence Source Affymetrix Proprietary Database