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[188029_at]

Description R106.1_rc /REP_DB=WormBase Gene ID /WP=CE07453 /TR=Q23032 /GB=AAB04991.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 60      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 9.1
(-2.6)
A 		6.8
(-3)
A 		7.4
(-2.9)
A 		41.1
(3)
A 		34
B 4.7
(-3)
A 		13.7
(-2.1)
A 		12.7
(-2.2)
A 		65.2
(3)
A 		61
C 9.2
(-2.4)
A 		28.7
(0.9)
A 		5.8
(-3)
A 		40.6
(3)
A 		35
avr 7.7
(-3) 		16.4
(-1.7) 		8.6
(-2.9) 		49
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 7.8
(-2.1)
A 		11.8
(-0.8)
A 		24.4
(3)
A 		4.7
(-3)
A 		5.7
(-2.7)
A 		15.2
(0.2)
A 		20
B 10.8
(3)
A 		4.7
(-1.4)
A 		8.7
(1.5)
A 		5.2
(-1)
A 		2.4
(-3)
A 		6.9
(0.2)
A 		8
C 10.3
(-1.9)
A 		5.9
(-2.7)
A 		4.6
(-3)
A 		34.5
(3)
A 		17.4
(-0.4)
A 		8.4
(-2.2)
A 		30
avr 9.6
(-1.3) 		7.5
(-3) 		12.6
(1.2) 		14.8
(3) 		8.5
(-2.2) 		10.2
(-0.8) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.3
(-0.6)
A 		1.5
(-3)
A 		1.9
(-2.5)
A 		6
(3)
A 		5
B 1.5
(-3)
A 		3.4
(-2.1)
A 		2.9
(-2.3)
A 		13.9
(3)
A 		12
C 3
(-2)
A 		8.2
(3)
A 		2
(-3)
A 		6.9
(1.7)
A 		6
avr 2.6
(-2.7) 		4.4
(-1.1) 		2.3
(-3) 		8.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.4
(-2.7)
A 		4.2
(1.4)
A 		5.3
(3)
A 		1.2
(-3)
A 		1.7
(-2.3)
A 		3.7
(0.7)
A 		4
B 3.8
(3)
A 		1.6
(-1.7)
A 		2.1
(-0.6)
A 		1.4
(-2.1)
A 		1
(-3)
A 		2.6
(0.4)
A 		3
C 3.8
(-0.3)
A 		1.8
(-2.4)
A 		1.2
(-3)
A 		6.9
(3)
A 		5.6
(1.6)
A 		2.8
(-1.3)
A 		6
avr 3
(1.3) 		2.5
(-3) 		2.9
(0.4) 		3.2
(3) 		2.8
(-0.4) 		3
(1.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188029_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28166
Sequence Type Exemplar sequence
Representative Public ID R106.1 NCBI
Target Description R106.1_rc /REP_DB=WormBase Gene ID /WP=CE07453 /TR=Q23032 /GB=AAB04991.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) R106.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R106.1 R106.1_rc /REP_DB=WormBase Gene ID /WP=CE07453 /TR=Q23032 /GB=AAB04991.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078431 11/11 Negative Strand Matching Probes A 
GENEFINDER00000044314 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17479751-17480219(-) 100.0 100.0
Public Domain and Genome References
Ensembl R106.1
Sequence
Target Sequence 
>C. ELEGANS:188029_AT
ttgaacgtggttgacgccttgtaccgcccggcttctcctcaaatagtgcagtatctcggc
taccggccaaccagctgccctctcgccggctggagggtggttggagagcggttaatagtg
aggcaagtgggatagagagcgagactccgacaacgaggcgcgtgtggaatttagaagaga
tgtgtagagaaagtggagagtgagagcagagaaggcagagaaaagtatagaaaatgtggc
gagagatgagcactgggagcatcgcagacagcgagggcgcgtgatcaccacaacaacatt
gatcgccgtctctctcgcgcacggaacaatgagtgagatgagtgaagtgagtgagggggc
gtgagcgtgcagtggtcccctggaagttttctcttctacgagattccatgcttctctgaa
ctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAACGTGGTTGACGCCTTGTACC 214 625 21 Antisense
CGGCTTCTCCTCAAATAGTGCAGTA 663 241 49 Antisense
AAATAGTGCAGTATCTCGGCTACCG 233 115 61 Antisense
ACTCCGACAACGAGGCGCGTGTGGA 409 99 164 Antisense
TGAGCACTGGGAGCATCGCAGACAG 362 569 267 Antisense
CAGACAGCGAGGGCGCGTGATCACC 205 205 285 Antisense
CACAACAACATTGATCGCCGTCTCT 265 195 309 Antisense
TCTCTCTCGCGCACGGAACAATGAG 127 611 329 Antisense
GTGAGTGAGGGGGCGTGAGCGTGCA 357 483 367 Antisense
TCCCCTGGAAGTTTTCTCTTCTACG 597 593 396 Antisense
GAGATTCCATGCTTCTCTGAACTCT 390 397 420 Antisense
Sequence Source Affymetrix Proprietary Database