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[188024_s_at]

Description C24G6.1 /REP_DB=WormBase Gene ID /WP=CE17456 /GEN=syp-2 /TR=O76388 /GB=AAC19209.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 09      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 300
1 2 3 4 range
A 40.5
(-3)
A 		74.6
(-2.3)
A 		43.8
(-2.9)
A 		340.2
(3)
A 		300
B 57.7
(-3)
A 		80.3
(-2.1)
A 		97
(-1.5)
A 		215.6
(3)
A 		158
C 48.7
(-3)
A 		68.8
(-2.4)
A 		71.6
(-2.3)
A 		235.9
(3)
A 		187
avr 49
(-3) 		74.6
(-2.3) 		70.8
(-2.4) 		263.9
(3) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 486
1 2 3 4 5 6 range
A 60.7
(-3)
A 		81.1
(-2.7)
A 		103.8
(-2.4)
A 		228.1
(-0.9)
P 		201.3
(-1.2)
A 		527.9
(3)
P 		467
B 48
(-3)
A 		74.9
(-2.6)
A 		113.1
(-2)
A 		160.2
(-1.3)
A 		392.8
(2.2)
P 		442.3
(3)
P 		394
C 69.1
(-2.6)
A 		42.2
(-3)
A 		140.6
(-1.4)
A 		148
(-1.3)
A 		351.4
(2.1)
P 		406.4
(3)
P 		364
avr 59.3
(-3) 		66.1
(-2.9) 		119.2
(-2.1) 		178.8
(-1.2) 		315.2
(0.8) 		458.9
(3) 		400
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 14.8
(-2.5)
A 		16.2
(-2.3)
A 		11.4
(-3)
A 		49.8
(3)
A 		38
B 18.4
(-3)
A 		19.8
(-2.7)
A 		22.5
(-2.1)
A 		45.9
(3)
A 		28
C 16.1
(-3)
A 		19.8
(-2.1)
A 		24.9
(-0.8)
A 		39.8
(3)
A 		24
avr 16.4
(-3) 		18.6
(-2.5) 		19.6
(-2.3) 		45.2
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 11.2
(-3)
A 		28.8
(-2.1)
A 		22.6
(-2.4)
A 		57.9
(-0.6)
P 		60.7
(-0.5)
A 		128.5
(3)
P 		117
B 16.7
(-3)
A 		24.9
(-2.7)
A 		27.5
(-2.6)
A 		42.4
(-2)
A 		159.6
(2.8)
P 		164.9
(3)
P 		148
C 25.6
(-2.4)
A 		12.9
(-3)
A 		35.8
(-1.9)
A 		29.8
(-2.2)
A 		113.7
(1.9)
P 		136.1
(3)
P 		123
avr 17.8
(-3) 		22.2
(-2.8) 		28.6
(-2.5) 		43.4
(-1.8) 		111.3
(1.5) 		143.2
(3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188024_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11809
Sequence Type Exemplar sequence
Representative Public ID C24G6.1 NCBI
Target Description C24G6.1 /REP_DB=WormBase Gene ID /WP=CE17456 /GEN=syp-2 /TR=O76388 /GB=AAC19209.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072061(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072061 NCBI Caenorhabditis elegans SYnaPsis in meiosis abnormal family member (syp-2) (syp-2) mRNA, complete cds. 11/11 None
SNAP00000033925 ENSEMBL cdna:SNAP chromosome:CEL140:V:5539364:5540144:1 11/11 None
GENEFINDER00000033926 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5539364:5540144:1 11/11 None
C24G6.1 ENSEMBL cdna:known chromosome:CEL140:V:5539364:5540144:1 gene:C24G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5539363-5540144(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol syp-2
Ensembl C24G6.1
Entrez Gene 178938 Entrez gene
SwissProt O76388 EMBL-EBI
WormBase CE17456 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19209 Synapsis in meiosis abnormal protein 2 [Caenorhabditis elegans] ref|NP_504462.1| SYnaPsis in meiosis abnormal family member (syp-2) [Caenorhabditis elegans] 3.0E-96
blast CAE64488 Hypothetical protein CBG09213 [Caenorhabditis briggsae] 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:188024_S_AT
tcgctcaaaaagcggccaggaccccaagatgaccggagagtcagcttcgcatctccagtg
tcttcttcacagaaaacagctgcagtaactgtggcggcccaaactaaacaacctgcaaaa
gcgaaaaatcttcgaactatgcattccacgccgaagaaatcgaaacctgctcatgatgtg
gccgatataatttcacttgtgagtaagcaaagcgacatattggatgacgtttctgaaatt
gaacacaaaatgatcaagcaggcgaaaatgacacaagatctgacaatggagctggcaaat
tcaatcgaacgtatcgcaaatatggcattagccgaaagtaaactcagcgaccaaatggag
aaacagtcaaagaagctcatttctctagaaggaaaaacaaaagagctcgtcgagaaagcc
aacaattggtctaaaacactcgaaaatcgcgttgacgccagatcgcatcattccacttgt
ctcaatgatgttcaggcggctataaaaataatcaataatgcaaaaatcaacaacgatggg
ttctcggaagatttctctgctcattacgacaaacttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTCAAAAAGCGGCCAGGACCCC 446 563 34 Antisense
ACAGCTGCAGTAACTGTGGCGGCCC 330 107 109 Antisense
AATCTTCGAACTATGCATTCCACGC 202 171 160 Antisense
TATGCATTCCACGCCGAAGAAATCG 100 657 171 Antisense
CGAAACCTGCTCATGATGTGGCCGA 323 253 194 Antisense
GGAGCTGGCAAATTCAATCGAACGT 375 521 321 Antisense
AGCCGAAAGTAAACTCAGCGACCAA 315 83 363 Antisense
CGCATCATTCCACTTGTCTCAATGA 340 255 497 Antisense
GTCTCAATGATGTTCAGGCGGCTAT 401 467 512 Antisense
GTTCTCGGAAGATTTCTCTGCTCAT 210 443 573 Antisense
CTCTGCTCATTACGACAAACTTCTG 574 231 588 Antisense
Sequence Source Affymetrix Proprietary Database