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[188023_at] T-box

Description C24H11.3 /REP_DB=WormBase Gene ID /WP=CE18526 /TR=Q9XVD5 /GB=CAB03909.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=T-box
Cluster 6grp_total > 82      4grp_total > 09      6grp_cgc > 75      6grp_cgc_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 8.3
(-3)
A 		12.5
(-2.5)
A 		15.5
(-2.2)
A 		61.9
(3)
A 		54
B 9.8
(-2.5)
A 		10.5
(-2)
A 		9.1
(-3)
A 		17.4
(3)
A 		8
C 10.4
(-3)
A 		17.6
(1.5)
A 		11.4
(-2.4)
A 		20.1
(3)
A 		10
avr 9.5
(-3) 		13.5
(-2) 		12
(-2.4) 		33.1
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 40.2
(1.8)
A 		9.1
(-2.8)
A 		47.1
(2.8)
A 		10.7
(-2.5)
A 		48.7
(3)
A 		7.6
(-3)
A 		41
B 11.1
(-2.6)
A 		45.8
(0.5)
A 		6.5
(-3)
A 		74.5
(3)
A 		28.5
(-1.1)
A 		50.4
(0.9)
A 		68
C 12.5
(-2.1)
A 		34.7
(3)
A 		34.8
(3)
A 		8.6
(-3)
A 		19.7
(-0.5)
A 		17.8
(-0.9)
A 		26
avr 21.3
(-3) 		29.9
(1.7) 		29.5
(1.5) 		31.3
(2.5) 		32.3
(3) 		25.3
(-0.8) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3
(-2.7)
A 		2.7
(-3)
A 		4.1
(-1.7)
A 		9.1
(3)
A 		6
B 3.1
(0.8)
A 		2.6
(-1.1)
A 		2.1
(-3)
A 		3.7
(3)
A 		2
C 3.5
(-2.6)
A 		5
(3)
A 		4
(-0.8)
A 		3.4
(-3)
A 		2
avr 3.2
(-3) 		3.4
(-2.5) 		3.4
(-2.5) 		5.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.4
(-0.4)
A 		3.2
(-2.4)
A 		10.2
(0.9)
A 		2.7
(-2.6)
A 		14.7
(3)
A 		1.9
(-3)
A 		13
B 3.9
(-2.2)
A 		15.2
(1.5)
A 		1.6
(-3)
A 		19.7
(3)
A 		11.6
(0.3)
A 		18.8
(2.7)
A 		18
C 4.6
(-1)
A 		10.6
(3)
A 		8.9
(1.9)
A 		1.7
(-3)
A 		6.4
(0.2)
A 		6
(-0.1)
A 		9
avr 5.3
(-3) 		9.7
(1.7) 		6.9
(-1.3) 		8
(-0.1) 		10.9
(3) 		8.9
(0.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188023_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7071
Sequence Type Exemplar sequence
Representative Public ID C24H11.3 NCBI
Target Description C24H11.3 /REP_DB=WormBase Gene ID /WP=CE18526 /TR=Q9XVD5 /GB=CAB03909.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=T-box
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067125(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067125 NCBI Caenorhabditis elegans C24H11.3 (T-box) mRNA, complete cds. 11/11 None
SNAP00000008942 ENSEMBL cdna:SNAP chromosome:CEL140:III:11766790:11789606:-1 11/11 None
GENEFINDER00000008957 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11784090:11787188:-1 11/11 None
C24H11.3 ENSEMBL cdna:known chromosome:CEL140:III:11784090:11785928:-1 gene:C24H11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11784085-11785924(-) 100.0 100.0
Public Domain and Genome References
Gene Title T-box
Gene Symbol tbx-38
Ensembl C24H11.3
Entrez Gene 182861 Entrez gene
SwissProt Q9XVD5 EMBL-EBI
WormBase CE18526 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21551 Hypothetical protein C24H11.7 [Caenorhabditis elegans] emb|CAB03915.1| Hypothetical protein C24H11.7 [Caenorhabditis elegans] ref|NP_499522.1| GBF1(Golgi-specific Brefeldin-A-resistant Factor 1) homolog family member (gbf-1) [Caenorhabditis elegans] 0.0
blast CAE67661 Hypothetical protein CBG13224 [Caenorhabditis briggsae] 0.0
blast CAB03909 Hypothetical protein C24H11.3 [Caenorhabditis elegans] ref|NP_499526.1| C24H11.3 [Caenorhabditis elegans] sp|Q9XVD5|TBX38_CAEEL Putative T-box protein 1.0E-163
blast CAB03909 Hypothetical protein C24H11.3 [Caenorhabditis elegans] ref|NP_499526.1| C24H11.3 [Caenorhabditis elegans] sp|Q9XVD5|TBX38_CAEEL Putative T-box protein 1.0E-162
blast CAB03909 Hypothetical protein C24H11.3 [Caenorhabditis elegans] ref|NP_499526.1| C24H11.3 [Caenorhabditis elegans] sp|Q9XVD5|TBX38_CAEEL Putative T-box protein 1.0E-161
blast CAB57892 Hypothetical protein Y47D3A.12 [Caenorhabditis elegans] ref|NP_499444.1| T BoX family member (tbx-37) [Caenorhabditis elegans] sp|Q9U2C9|TBX37_CAEEL Putative T-box protein 1.0E-116
blast CAB57892 Hypothetical protein Y47D3A.12 [Caenorhabditis elegans] ref|NP_499444.1| T BoX family member (tbx-37) [Caenorhabditis elegans] sp|Q9U2C9|TBX37_CAEEL Putative T-box protein 1.0E-115
blast CAE67636 Hypothetical protein CBG13193 [Caenorhabditis briggsae] 4.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 2.2E-45
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 2.2E-45
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 2.2E-45
Sequence
Target Sequence 
>C. ELEGANS:188023_AT
gcataagcacattccagtggtcactgttaaacaggtccgacattataagacagggtatca
agaggattttagtggggagcagttccggttggaggctactgaatttatggtggtcactgc
ttatcagaacgaaatcctcaaaaacctcaaggttcatcacaataaatttgcatccggatt
tcgttcgaatggcaagagacggctttcttcagactctgaaaattctgaaaactctccgcc
caaacgcagcaaattggtaaccccaccgacaatctcaccgcaaatagatctcccacagca
aaccccgtattatttcaaccagaattttgtggctccgcagaactaccagccacagtttgc
aagtgctcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATAAGCACATTCCAGTGGTCACT 81 307 411 Antisense
GAGCAGTTCCGGTTGGAGGCTACTG 638 375 487 Antisense
TATGGTGGTCACTGCTTATCAGAAC 500 655 516 Antisense
ATTTGCATCCGGATTTCGTTCGAAT 341 17 576 Antisense
TGAAAATTCTGAAAACTCTCCGCCC 320 573 627 Antisense
CGCAGCAAATTGGTAACCCCACCGA 128 255 655 Antisense
CCGCAAATAGATCTCCCACAGCAAA 418 263 688 Antisense
CCACAGCAAACCCCGTATTATTTCA 306 273 703 Antisense
TCAACCAGAATTTTGTGGCTCCGCA 501 631 725 Antisense
GTGGCTCCGCAGAACTACCAGCCAC 489 491 739 Antisense
CCAGCCACAGTTTGCAAGTGCTCAG 639 273 756 Antisense
Sequence Source Affymetrix Proprietary Database