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[188022_s_at] lectin

Description ZK858.3 /REP_DB=WormBase Gene ID /WP=CE15425 /TR=Q94417 /GB=CAB02136.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=lectin
Cluster 6grp_total > 88      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 70.5
(-1.8)
A 		95.3
(-0.8)
A 		42.5
(-3)
A 		187.3
(3)
A 		145
B 65.1
(-3)
A 		147.8
(0.1)
A 		87.4
(-2.2)
A 		223.8
(3)
A 		159
C 109.5
(-2)
A 		121.3
(-1.6)
A 		82
(-3)
A 		251
(3)
A 		169
avr 81.7
(-2.6) 		121.5
(-1) 		70.6
(-3) 		220.7
(3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2640
1 2 3 4 5 6 range
A 148.8
(-2.8)
A 		115.2
(-2.9)
A 		73.4
(-3)
A 		183.8
(-2.7)
P 		1461.5
(0.5)
P 		2468.4
(3)
P 		2395
B 158.7
(-2.8)
P 		93.2
(-3)
A 		104.6
(-3)
A 		125.3
(-2.9)
P 		1431.3
(0.4)
P 		2450
(3)
P 		2357
C 177.1
(-2.8)
A 		102.4
(-3)
A 		107.6
(-3)
A 		177.4
(-2.8)
M 		1483.9
(0.2)
P 		2713.1
(3)
P 		2611
avr 161.5
(-2.8) 		103.6
(-3) 		95.2
(-3) 		162.2
(-2.8) 		1458.9
(0.3) 		2543.8
(3) 		2449
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 25.7
(2.4)
A 		20.7
(0.5)
A 		11.1
(-3)
A 		27.4
(3)
A 		16
B 20.8
(-2.9)
A 		36.5
(0.5)
A 		20.3
(-3)
A 		47.7
(3)
A 		27
C 36.2
(0.3)
A 		34.9
(-0.2)
A 		28.6
(-3)
A 		42.3
(3)
A 		14
avr 27.6
(-0.6) 		30.7
(0.4) 		20
(-3) 		39.1
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 898
1 2 3 4 5 6 range
A 27.4
(-2.9)
A 		41
(-2.7)
A 		16
(-3)
A 		46.6
(-2.7)
P 		441
(1.4)
P 		601
(3)
P 		585
B 55.2
(-2.8)
P 		31
(-3)
A 		25.4
(-3)
A 		33.2
(-2.9)
P 		581.5
(0.8)
P 		913.6
(3)
P 		888
C 65.6
(-2.7)
A 		31.2
(-3)
A 		27.4
(-3)
A 		35.7
(-2.9)
M 		480.2
(0.1)
P 		908.2
(3)
P 		881
avr 49.4
(-2.8) 		34.4
(-2.9) 		22.9
(-3) 		38.5
(-2.9) 		500.9
(0.7) 		807.6
(3) 		785
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188022_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1736
Sequence Type Exemplar sequence
Representative Public ID ZK858.3 NCBI
Target Description ZK858.3 /REP_DB=WormBase Gene ID /WP=CE15425 /TR=Q94417 /GB=CAB02136.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=lectin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060047(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060047 NCBI Caenorhabditis elegans ZK858.3 (lectin) mRNA, complete cds. 11/11 None
SNAP00000011875 ENSEMBL cdna:SNAP chromosome:CEL140:I:9134367:9135154:-1 11/11 None
GENEFINDER00000011883 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9134367:9135154:-1 11/11 None
ZK858.3 ENSEMBL cdna:known chromosome:CEL140:I:9134328:9135154:-1 gene:ZK858.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9134297-9135085(-) 100.0 100.0
Public Domain and Genome References
Gene Title lectin
Ensembl ZK858.3
Entrez Gene 172736 Entrez gene
SwissProt Q94417 EMBL-EBI
WormBase CE15425 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02136 Hypothetical protein ZK858.3 [Caenorhabditis elegans] ref|NP_492448.1| ZK858.3 [Caenorhabditis elegans] 1.0E-110
blast CAE67043 Hypothetical protein CBG12450 [Caenorhabditis briggsae] 2.0E-81
blast CAE59878 Hypothetical protein CBG03358 [Caenorhabditis briggsae] 4.0E-78
Sequence
Target Sequence 
>C. ELEGANS:188022_S_AT
acaaatgagacgcctgttctcgcgcattcctccgatgagcaacctcatcaaagattgaca
tactacaactgggaccacaaggatcttggcaccagcgcattcgaggatcttccaccgctt
caagatcagccgacaccccttccaatcgatcaatccgatcgttgcccggatggctggttg
agatattcggactcgtgctacttcatcgaaacagaatcacttggattcgcaaaagccgaa
cgaaagtgccacgataagcaggcgacactattcgttgccaactcgatggaagaatgggat
gctgttcgcgatcacgctgaaaagtcagtcttgtcatggatcggtctcgttagattctca
cattacgaaagattggagcagttgccaagatggcaaactactggatccattaatccatct
aagatcaactggctcatcaaaccgttcaaaccagtcgtcaatggatggtcatcgtatgcc
aactgtgctgcaagcttccagtctccaaccgaagtcgaatctgcttcgtacaccttcttc
tatccgtgcactatggcgttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAATGAGACGCCTGTTCTCGCGC 444 111 82 Antisense
ATCGTTGCCCGGATGGCTGGTTGAG 472 33 239 Antisense
GGACTCGTGCTACTTCATCGAAACA 212 525 270 Antisense
GCAGGCGACACTATTCGTTGCCAAC 618 297 339 Antisense
GATGCTGTTCGCGATCACGCTGAAA 57 415 379 Antisense
TCAGTCTTGTCATGGATCGGTCTCG 539 621 406 Antisense
GATCGGTCTCGTTAGATTCTCACAT 264 419 420 Antisense
ATGCCAACTGTGCTGCAAGCTTCCA 386 41 557 Antisense
TCCAGTCTCCAACCGAAGTCGAATC 299 589 578 Antisense
AAGTCGAATCTGCTTCGTACACCTT 616 157 593 Antisense
TCTATCCGTGCACTATGGCGTTCAA 264 615 620 Antisense
Sequence Source Affymetrix Proprietary Database