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[188020_s_at]

Description F35C8.3 /REP_DB=WormBase Gene ID /WP=CE24941 /GEN=jkk-1 /TR=Q20028 /GB=AAA81711.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 0      4grp_highest_8_8 > 53      4grp_high_8_8 > 08      6grp_highest_nonorm > 90      6grp_total > 13      4grp_total > 23      6grp_cgc > 40      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 293.8
(3)
P 		146.5
(-2.2)
P 		122.7
(-3)
P 		220
(0.4)
P 		171
B 191.2
(0.8)
P 		106.4
(-3)
P 		147.5
(-1.2)
P 		242
(3)
P 		136
C 259.5
(3)
P 		99.6
(-3)
P 		113
(-2.5)
P 		150.3
(-1.1)
P 		160
avr 248.2
(3) 		117.5
(-3) 		127.7
(-2.5) 		204.1
(1) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 201.7
(2.7)
P 		130.6
(-1.1)
P 		116.3
(-1.9)
P 		207.3
(3)
P 		96
(-3)
P 		117.7
(-1.8)
P 		111
B 162.7
(0.6)
P 		217.4
(3)
P 		149.8
(0.1)
P 		163
(0.6)
P 		79.9
(-3)
P 		130.2
(-0.8)
P 		138
C 166
(2)
P 		179.9
(3)
P 		145.6
(0.6)
P 		162.9
(1.8)
P 		95.6
(-3)
P 		122.9
(-1.1)
P 		84
avr 176.8
(2.9) 		176
(2.9) 		137.2
(0.2) 		177.7
(3) 		90.5
(-3) 		123.6
(-0.7) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 107
(3)
P 		31.8
(-3)
P 		32.1
(-3)
P 		32.2
(-3)
P 		75
B 61
(3)
P 		26.3
(-3)
P 		34.2
(-1.6)
P 		51.6
(1.4)
P 		35
C 85.9
(3)
P 		28.6
(-2.7)
P 		39.4
(-1.6)
P 		25.3
(-3)
P 		61
avr 84.6
(3) 		28.9
(-3) 		35.2
(-2.3) 		36.4
(-2.2) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 37.2
(-0.4)
P 		46.4
(1.6)
P 		25.3
(-3)
P 		52.6
(3)
P 		29
(-2.2)
P 		28.7
(-2.3)
P 		27
B 56.6
(0.6)
P 		72.4
(3)
P 		36.4
(-2.4)
P 		43.2
(-1.4)
P 		32.5
(-3)
P 		48.6
(-0.6)
P 		40
C 61.5
(3)
P 		54.9
(1.7)
P 		37
(-1.8)
P 		32.8
(-2.6)
P 		30.9
(-3)
P 		41.1
(-1)
P 		31
avr 51.8
(1.6) 		57.9
(3) 		32.9
(-2.5) 		42.9
(-0.3) 		30.8
(-3) 		39.5
(-1.1) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188020_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16645
Sequence Type Exemplar sequence
Representative Public ID F35C8.3 NCBI
Target Description F35C8.3 /REP_DB=WormBase Gene ID /WP=CE24941 /GEN=jkk-1 /TR=Q20028 /GB=AAA81711.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076512 NCBI Caenorhabditis elegans JNK Kinase family member (jkk-1) (jkk-1) mRNA, complete cds. 11/11 A 
GENEFINDER00000043843 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5368373:5371775:1 11/11 None
SNAP00000043831 ENSEMBL cdna:SNAP chromosome:CEL140:X:5370399:5371775:1 11/11 None
F35C8.3 ENSEMBL cdna:known chromosome:CEL140:X:5368431:5372024:1 gene:F35C8.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5368630-5371776(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol jkk-1
Ensembl F35C8.3
Entrez Gene 180810 Entrez gene
SwissProt Q9UAH1 EMBL-EBI
WormBase CE24941 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81711 Jnk kinase protein 1 [Caenorhabditis elegans] ref|NP_508913.1| JNK Kinase family member (jkk-1) [Caenorhabditis elegans] dbj|BAA82641.1| JKK-1 [Caenorhabditis elegans] 0.0
blast CAE68744 Hypothetical protein CBG14676 [Caenorhabditis briggsae] 0.0
blast AAA81711 Jnk kinase protein 1 [Caenorhabditis elegans] ref|NP_508913.1| JNK Kinase family member (jkk-1) [Caenorhabditis elegans] dbj|BAA82641.1| JKK-1 [Caenorhabditis elegans] 1.0E-166
blast CAE68744 Hypothetical protein CBG14676 [Caenorhabditis briggsae] 1.0E-148
blast AAH68887 Map2k7-A protein [Xenopus laevis] dbj|BAB85484.1| MAPK kinase 7 [Xenopus laevis] 2.0E-62
Protein Families
Method ID Description E-Value
hanks 1.4.3 AGC group; AGC IV GPCR kinases; RhoK 4.0E-16
hanks 1.4.3 AGC group; AGC IV GPCR kinases; RhoK 6.0E-17
hanks 1.1.10 AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); DdPK1 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.9E-54
Pfam IPR000719 EMBL-EBI Protein kinase 1.9E-54
Pfam IPR000719 EMBL-EBI Protein kinase 3.0E-45
Sequence
Target Sequence 
>C. ELEGANS:188020_S_AT
aaaccctcgaatatcctttttgatgacagcggcaatgtaaagctgtgtgattttgggata
agtggatttatgactgattcgatggctcattccaaaagtgcaggatgtccgccatatatg
gctcctgaaagattaactatcgagacgaattccaaatacgacgttcgaagcgatgtctgg
tcattgggaatcactgtttaccaacttgtcactggactctacccatttccactaaatgac
atggaattcacaactctcaccattattgcaaacctgaatttgccatcaccaagtctgaga
gaagagacaaagcgaagtttttcacctctattcattgaattcttggacctatgcttgcga
aaggatgttcgagaaagacctgaatataggcaattaatgaagcatgatttctaccttgat
tacgaccctgccagtggaagtgcttacaagttcaaagctatcaatggaaaatgcaatcaa
gttgcggattggttcgtcgacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCCTCGAATATCCTTTTTGATG 91 1 754 Antisense
GACTGATTCGATGGCTCATTCCAAA 575 375 825 Antisense
GGATGTCCGCCATATATGGCTCCTG 45 515 856 Antisense
TACCAACTTGTCACTGGACTCTACC 151 651 952 Antisense
AACTCTCACCATTATTGCAAACCTG 565 139 1005 Antisense
GAATTTGCCATCACCAAGTCTGAGA 596 325 1029 Antisense
AGCGAAGTTTTTCACCTCTATTCAT 49 77 1064 Antisense
GAATTCTTGGACCTATGCTTGCGAA 201 325 1090 Antisense
ATGATTTCTACCTTGATTACGACCC 336 45 1157 Antisense
TACGACCCTGCCAGTGGAAGTGCTT 534 647 1174 Antisense
AAGTTGCGGATTGGTTCGTCGACGT 215 155 1232 Antisense
Sequence Source Affymetrix Proprietary Database