[Home] | [Total List]

[188019_at]

Description Y39E4B.8 /REP_DB=WormBase Gene ID /WP=CE24241 /GEN=zig-8 /TR=Q9U2J7 /GB=CAB54429.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 05      6grp_total > 06      4grp_total > 53      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 106
(3)
P 		94.6
(1.5)
A 		59.8
(-3)
M 		76.1
(-0.9)
A 		46
B 111.9
(3)
P 		71.1
(-0.3)
A 		87.9
(1.1)
M 		38
(-3)
A 		74
C 119.9
(3)
P 		119.5
(3)
P 		81.8
(-0.6)
P 		55.9
(-3)
A 		64
avr 112.6
(3) 		95.1
(1.1) 		76.5
(-0.9) 		56.7
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 144.8
(3)
P 		111.9
(1.2)
P 		93.3
(0.2)
P 		40.5
(-2.6)
P 		55.8
(-1.8)
P 		33.8
(-3)
A 		111
B 157.9
(3)
P 		111.5
(0.4)
P 		65.3
(-2.1)
P 		56.3
(-2.6)
A 		75.4
(-1.6)
P 		49.4
(-3)
P 		109
C 158
(3)
P 		108.4
(0.6)
P 		77
(-0.9)
P 		61.6
(-1.7)
P 		34.5
(-3)
A 		39.7
(-2.7)
P 		124
avr 153.6
(3) 		110.6
(0.7) 		78.5
(-1) 		52.8
(-2.4) 		55.2
(-2.2) 		41
(-3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 38.6
(3)
P 		20.5
(-0.9)
A 		15.6
(-2)
M 		11.1
(-3)
A 		28
B 35.7
(3)
P 		17.6
(-0.9)
A 		20.4
(-0.3)
M 		8.1
(-3)
A 		28
C 39.7
(3)
P 		34.4
(2)
P 		28.5
(0.8)
P 		9.4
(-3)
A 		30
avr 38
(3) 		24.2
(0.1) 		21.5
(-0.5) 		9.5
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 26.7
(0.5)
P 		39.8
(3)
P 		20.3
(-0.7)
P 		10.3
(-2.6)
P 		16.8
(-1.4)
P 		8.2
(-3)
A 		32
B 54.9
(3)
P 		37.1
(0.3)
P 		15.9
(-2.9)
P 		14.9
(-3)
A 		30.6
(-0.6)
P 		18.4
(-2.5)
P 		40
C 58.6
(3)
P 		33.1
(-0.2)
P 		19.6
(-1.9)
P 		12.4
(-2.8)
P 		11.2
(-3)
A 		13.3
(-2.7)
P 		47
avr 46.7
(3) 		36.7
(1.2) 		18.6
(-1.9) 		12.5
(-3) 		19.5
(-1.8) 		13.3
(-2.9) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188019_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6659
Sequence Type Exemplar sequence
Representative Public ID Y39E4B.8 NCBI
Target Description Y39E4B.8 /REP_DB=WormBase Gene ID /WP=CE24241 /GEN=zig-8 /TR=Q9U2J7 /GB=CAB54429.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067313(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067313 NCBI Caenorhabditis elegans 2 (Zwei) IG-domain protein family member (zig-8) (zig-8) mRNA, complete cds. 11/11 None
GENEFINDER00000012027 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13127245:13133346:1 9/11 None
Y39E4B.8 ENSEMBL cdna:known chromosome:CEL140:III:13119355:13133392:1 gene:Y39E4B.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012012 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13119370-13133323(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol zig-8
Ensembl Y39E4B.8
Entrez Gene 176732 Entrez gene
SwissProt Q9U2J7 EMBL-EBI
WormBase CE24241 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54429 Hypothetical protein Y39E4B.8 [Caenorhabditis elegans] ref|NP_499714.1| 2 (Zwei) IG-domain protein family member (zig-8) [Caenorhabditis elegans] gb|AAL59611.1| secreted 2-immunoglobulin-domain protein ZIG-8 [Caenorhabditis elegans] 1.0E-139
blast CAB54429 Hypothetical protein Y39E4B.8 [Caenorhabditis elegans] ref|NP_499714.1| 2 (Zwei) IG-domain protein family member (zig-8) [Caenorhabditis elegans] gb|AAL59611.1| secreted 2-immunoglobulin-domain protein ZIG-8 [Caenorhabditis elegans] 7.0E-83
blast CAE72962 Hypothetical protein CBG20296 [Caenorhabditis briggsae] 2.0E-79
blast CAE72962 Hypothetical protein CBG20296 [Caenorhabditis briggsae] 4.0E-51
blast CAE56452 Hypothetical protein CBG24158 [Caenorhabditis briggsae] 1.0E-30
blast CAE56452 Hypothetical protein CBG24158 [Caenorhabditis briggsae] 2.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.01
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.2E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.2E-7
Sequence
Target Sequence 
>C. ELEGANS:188019_AT
tccagacgcggagcatgagattgcatggacccgagtctccgacggagccttattgacagc
tggcaaccgcaccttcacacgagatccaagatggcaggtgtcaaagaagtctgctaatat
ttgggtattgaatttgagacgagccgagcagcaggattcgggatgttatttatgtgaaat
caatgacaagcacaatacagtgtatgcagtttatttgaaagttctggagccaccacttcc
atctccatcttcactgcagaaaaaatccacaaaactgatggcaaacatgtctggggatga
agtagttcttaactgtactgtaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAGACGCGGAGCATGAGATTGCA 594 589 192 Antisense
TGAGATTGCATGGACCCGAGTCTCC 77 569 207 Antisense
TCTCCGACGGAGCCTTATTGACAGC 67 611 227 Antisense
AGCCTTATTGACAGCTGGCAACCGC 390 79 237 Antisense
GCACCTTCACACGAGATCCAAGATG 429 315 260 Antisense
GATCCAAGATGGCAGGTGTCAAAGA 616 413 274 Antisense
TGAGACGAGCCGAGCAGCAGGATTC 325 567 326 Antisense
GAGCAGCAGGATTCGGGATGTTATT 618 389 337 Antisense
CATCTCCATCTTCACTGCAGAAAAA 196 213 431 Antisense
AACTGATGGCAAACATGTCTGGGGA 201 139 464 Antisense
GTAGTTCTTAACTGTACTGTAACAT 113 453 493 Antisense
Sequence Source Affymetrix Proprietary Database