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[188018_at] lipase

Description F31F6.7 /REP_DB=WormBase Gene ID /WP=CE05779 /TR=Q19941 /GB=CAA93747.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=lipase
Cluster 6grp_total > 81      4grp_total > 31      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 44.4
(3)
A 		9.2
(-2.8)
A 		8.1
(-3)
A 		12.7
(-2.2)
A 		36
B 6.1
(-1.8)
A 		11.5
(3)
A 		11
(2.6)
A 		4.7
(-3)
A 		7
C 9.9
(-1.9)
A 		8.5
(-2.3)
A 		6.1
(-3)
A 		27.7
(3)
A 		22
avr 20.1
(3) 		9.7
(-2.3) 		8.4
(-3) 		15
(0.4) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 13
(-2.8)
A 		12.5
(-2.8)
A 		13
(-2.8)
A 		199.5
(3)
P 		168.2
(2)
A 		5.9
(-3)
A 		194
B 7.2
(-2.9)
A 		8.7
(-2.9)
A 		36.4
(-2.1)
A 		214.7
(3)
P 		159.2
(1.4)
P 		5
(-3)
A 		210
C 4.4
(-3)
A 		10
(-2.8)
A 		15.8
(-2.5)
A 		152.9
(3)
P 		93.6
(0.6)
A 		8.4
(-2.8)
A 		149
avr 8.2
(-2.9) 		10.4
(-2.9) 		21.7
(-2.5) 		189
(3) 		140.3
(1.4) 		6.4
(-3) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.2
(3)
A 		2
(-3)
A 		2.1
(-2.9)
A 		1.9
(-3)
A 		14
B 1.9
(0)
A 		2.8
(3)
A 		2.6
(2.3)
A 		1
(-3)
A 		2
C 3.3
(-0.2)
A 		2.4
(-2.3)
A 		2.1
(-3)
A 		4.7
(3)
A 		3
avr 7.1
(3) 		2.4
(-2.9) 		2.3
(-3) 		2.5
(-2.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 2.4
(-2.9)
A 		4.4
(-2.6)
A 		2.8
(-2.8)
A 		50.6
(3)
P 		50.8
(3)
A 		1.4
(-3)
A 		49
B 2.5
(-2.9)
A 		2.9
(-2.9)
A 		8.8
(-2.3)
A 		56.9
(2.3)
P 		64.7
(3)
P 		1.9
(-3)
A 		63
C 1.6
(-3)
A 		3
(-2.7)
A 		4
(-2.5)
A 		30.7
(3)
P 		30.3
(2.9)
A 		2.8
(-2.8)
A 		29
avr 2.2
(-3) 		3.4
(-2.8) 		5.2
(-2.6) 		46.1
(2.7) 		48.6
(3) 		2
(-3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188018_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17946
Sequence Type Exemplar sequence
Representative Public ID F31F6.7 NCBI
Target Description F31F6.7 /REP_DB=WormBase Gene ID /WP=CE05779 /TR=Q19941 /GB=CAA93747.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=lipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078073(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078073 NCBI Caenorhabditis elegans F31F6.7 (lipase) mRNA, complete cds. 11/11 None
GENEFINDER00000015873 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14898422:14900674:1 11/11 None
SNAP00000015871 ENSEMBL cdna:SNAP chromosome:CEL140:X:14898703:14900689:1 11/11 None
F31F6.7 ENSEMBL cdna:known chromosome:CEL140:X:14898422:14900689:1 gene:F31F6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14898421-14900689(+) 100.0 100.0
Public Domain and Genome References
Gene Title lipase
Ensembl F31F6.7
Entrez Gene 185178 Entrez gene
SwissProt Q19941 EMBL-EBI
WormBase CE05779 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16298 lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93747 Hypothetical protein F31F6.7 [Caenorhabditis elegans] ref|NP_510474.1| F31F6.7 [Caenorhabditis elegans] 0.0
blast CAE63244 Hypothetical protein CBG07609 [Caenorhabditis briggsae] 1.0E-173
blast CAE63244 Hypothetical protein CBG07609 [Caenorhabditis briggsae] 1.0E-171
blast CAE63244 Hypothetical protein CBG07609 [Caenorhabditis briggsae] 1.0E-141
blast CAE59397 Hypothetical protein CBG02760 [Caenorhabditis briggsae] 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 1.0E-126
Pfam IPR002918 EMBL-EBI Lipase, class 2 3.3E-123
Sequence
Target Sequence 
>C. ELEGANS:188018_AT
ggattgtattccggactttgtccaactgaaagtgattttttaacggatattaacgaaaaa
aatcattacgaaggcaaatacgtttttacattgtatactgaaaccgatgaatggattgga
tataaaatttgtgacaagataacagctagaattcctggcgaagatggtcacagaatatat
aagaaatattcacatgatgaaattatattgagaacttgtgatacacaaattgaaatgatg
cagtctcatacttctccatcagatgtttctgaagagccgcaatctcaaataaaacgagct
ttacccaaatcaaggcaaactcgaaaacgaaacattgaagattatgactacctcagtgag
ctcagtagctcaaatttcgagaccgcaccgcaagagcttcaaggttcctcaaaaatgtcc
caaacagtcatccccactaccgtcagaagttatgaaactgtaacaagaagctacgaatca
tcatatctcccgccgcgcattgtgaagagtgacattgatatgataaatgcgaggccttat
cagttcaagacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTGTATTCCGGACTTTGTCCAA 167 509 664 Antisense
TGATGCAGTCTCATACTTCTCCATC 19 567 899 Antisense
GATGTTTCTGAAGAGCCGCAATCTC 671 409 925 Antisense
AACGAGCTTTACCCAAATCAAGGCA 422 1 956 Antisense
GACTACCTCAGTGAGCTCAGTAGCT 428 371 1009 Antisense
GTAGCTCAAATTTCGAGACCGCACC 196 457 1028 Antisense
ACCGCACCGCAAGAGCTTCAAGGTT 136 89 1045 Antisense
ATCCCCACTACCGTCAGAAGTTATG 206 37 1093 Antisense
AGCTACGAATCATCATATCTCCCGC 587 79 1132 Antisense
CCGCCGCGCATTGTGAAGAGTGACA 660 261 1153 Antisense
GCGAGGCCTTATCAGTTCAAGACGA 165 291 1192 Antisense
Sequence Source Affymetrix Proprietary Database