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[188015_at]

Description T14F9.4 /REP_DB=WormBase Gene ID /WP=CE07500 /GEN=peb-1 /TR=Q22491 /GB=AAA91262.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 0      6grp_total > 09      4grp_total > 17      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 606
1 2 3 4 range
A 57.6
(-3)
A 		242.6
(-1)
P 		119.4
(-2.3)
A 		618.9
(3)
P 		561
B 13
(-3)
A 		228.8
(-0.7)
A 		176.4
(-1.3)
P 		574.2
(3)
P 		561
C 36.4
(-3)
A 		222.7
(-0.9)
P 		171.7
(-1.5)
P 		568.8
(3)
P 		532
avr 35.7
(-3) 		231.4
(-0.9) 		155.8
(-1.7) 		587.3
(3) 		552

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 220.2
(2.7)
P 		164.2
(0.4)
P 		78.3
(-3)
A 		228.8
(3)
P 		156.6
(0.1)
P 		92.9
(-2.4)
M 		151
B 218
(0.8)
P 		88.6
(-3)
P 		158.2
(-0.9)
P 		290.8
(3)
P 		170.2
(-0.6)
P 		112.4
(-2.3)
P 		202
C 321.2
(3)
P 		134.9
(-1.8)
P 		114.5
(-2.3)
P 		220.6
(0.4)
P 		204.7
(0)
P 		85.9
(-3)
M 		235
avr 253.1
(3) 		129.2
(-1.8) 		117
(-2.2) 		246.7
(2.8) 		177.2
(0.1) 		97.1
(-3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 21
(-3)
A 		52.7
(-0.3)
P 		31.2
(-2.1)
A 		90.6
(3)
P 		70
B 4.1
(-3)
A 		56.5
(-0.3)
A 		40.9
(-1.1)
P 		122.4
(3)
P 		118
C 12
(-3)
A 		64
(0.7)
P 		59.8
(0.4)
P 		95.9
(3)
P 		84
avr 12.4
(-3) 		57.7
(0) 		44
(-0.9) 		103
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 40.6
(0.4)
P 		58.4
(3)
P 		17
(-3)
A 		58
(2.9)
P 		47.2
(1.4)
P 		22.6
(-2.2)
M 		41
B 75.8
(2.8)
P 		29.5
(-3)
P 		38.4
(-1.9)
P 		77
(3)
P 		69.1
(2)
P 		41.9
(-1.4)
P 		48
C 119.1
(3)
P 		41.1
(-2.2)
P 		29.1
(-3)
P 		44.4
(-2)
P 		66.2
(-0.5)
P 		28.8
(-3)
M 		90
avr 78.5
(3) 		43
(-1.2) 		28.2
(-3) 		59.8
(0.8) 		60.8
(0.9) 		31.1
(-2.7) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188015_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18246
Sequence Type Exemplar sequence
Representative Public ID T14F9.4 NCBI
Target Description T14F9.4 /REP_DB=WormBase Gene ID /WP=CE07500 /GEN=peb-1 /TR=Q22491 /GB=AAA91262.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029739 NCBI Caenorhabditis elegans Pharyngeal Enhancer Binding family member (peb-1) (peb-1) mRNA, complete cds. 11/11 None
GENEFINDER00000024573 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2215626:2218094:1 11/11 None
SNAP00000024567 ENSEMBL cdna:SNAP chromosome:CEL140:X:2216911:2218094:1 11/11 None
T14F9.4a.1 ENSEMBL cdna:known chromosome:CEL140:X:2215621:2218973:1 gene:T14F9.4 11/11 None
T14F9.4a.2 ENSEMBL cdna:known chromosome:CEL140:X:2215623:2218973:1 gene:T14F9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180532 2 1 NM_001029739 174029_at (11), 188015_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2215625-2218094(+) 100.0 100.0
Public Domain and Genome References
Ensembl T14F9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA91262 Pharyngeal enhancer binding protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024910.1| Pharyngeal Enhancer Binding family member (peb-1) [Caenorhabditis elegans] 1.0E-178
blast AAD42897 pharyngeal enhancer binding protein-1 [Caenorhabditis elegans] 1.0E-177
blast CAE68338 Hypothetical protein CBG14059 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR007588 EMBL-EBI FLYWCH Zn-finger 5.0E-30
Sequence
Target Sequence 
>C. ELEGANS:188015_AT
ttcagccatacaccgactattcaaattcctcaacctatcccaactcctatccaacatcaa
caacaagagcaaagcaatttacttcagcctgcaacgttgaatggtatgaacaatccatgg
atgggaatggaagatcacctcgcaatgatctgggcggcaaatgctatgttgaacccaggc
ctggatgtactttccactattgctgcactttccaagcatcagcagcatgtccaaggtcca
tcgcctcaacaagctgcaacggctccaacaactgcttccctttcttcaaatctttctgtc
agtagcttcacaccgcaaatgcccaaggaagcttccatcgcaattccagctccacttcag
gtgcttaacttgaaagatctgaaacctcttccaccactcgcgaacattcaaacgagccca
gtcattcaagcagccaatctacttttgccagtagccgcgttgaaaaaagattcgagcact
cagaccacagaggaaatcaaagtatctcagtgcctgacttctggctgcgggtgccgtgtg
atccgaatttgctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAGCCATACACCGACTATTCAAA 61 687 703 Antisense
TCACCTCGCAATGATCTGGGCGGCA 705 625 837 Antisense
CCAGGCCTGGATGTACTTTCCACTA 648 261 877 Antisense
TTTCCACTATTGCTGCACTTTCCAA 484 669 893 Antisense
ATCGCCTCAACAAGCTGCAACGGCT 155 37 942 Antisense
GTCAGTAGCTTCACACCGCAAATGC 311 465 1000 Antisense
CAGCTCCACTTCAGGTGCTTAACTT 38 205 1049 Antisense
GAAAGATCTGAAACCTCTTCCACCA 528 359 1074 Antisense
GAACATTCAAACGAGCCCAGTCATT 202 351 1104 Antisense
AAGCAGCCAATCTACTTTTGCCAGT 551 151 1130 Antisense
GTGCCGTGTGATCCGAATTTGCTGC 615 477 1233 Antisense
Sequence Source Affymetrix Proprietary Database