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[188013_at] myosin

Description T22C1.6 /REP_DB=WormBase Gene ID /WP=CE24002 /TR=Q22666 /GB=CAA99923.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=myosin
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 82      6grp_total > 64      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 131
(-3)
P 		315.1
(0.8)
P 		176.7
(-2.1)
P 		420.7
(3)
P 		290
B 152.5
(-3)
P 		303.9
(1.1)
P 		314.2
(1.4)
P 		372.3
(3)
P 		220
C 221.8
(-3)
P 		322.9
(0.8)
P 		379.7
(3)
P 		337.2
(1.4)
P 		158
avr 168.4
(-3) 		314
(1.2) 		290.2
(0.5) 		376.7
(3) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 246.9
(-3)
P 		361.4
(2.4)
P 		365.2
(2.6)
P 		324.1
(0.6)
P 		263.5
(-2.2)
P 		374.6
(3)
P 		128
B 301.5
(-2.7)
P 		318.8
(-2.4)
P 		574.5
(3)
P 		288.2
(-3)
P 		300.2
(-2.7)
P 		367.8
(-1.3)
P 		286
C 328
(-0.7)
P 		343.9
(0.3)
P 		289.2
(-3)
P 		370.4
(1.8)
P 		326.7
(-0.8)
P 		389.8
(3)
P 		101
avr 292.1
(-3) 		341.4
(-0.5) 		409.6
(3) 		327.6
(-1.2) 		296.8
(-2.8) 		377.4
(1.4) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 47.7
(-2.6)
P 		68.4
(3)
P 		46.2
(-3)
P 		61.6
(1.2)
P 		22
B 48.6
(-3)
P 		75.1
(2.2)
P 		72.8
(1.7)
P 		79.3
(3)
P 		31
C 73.4
(-1.7)
P 		92.8
(-0.1)
P 		132.3
(3)
P 		56.9
(-3)
P 		75
avr 56.6
(-3) 		78.8
(1.9) 		83.8
(3) 		65.9
(-0.9) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 45.5
(-3)
P 		128.5
(3)
P 		79.5
(-0.5)
P 		82.2
(-0.3)
P 		79.5
(-0.5)
P 		91.2
(0.3)
P 		83
B 104.9
(-0.3)
P 		106.1
(-0.2)
P 		139.5
(3)
P 		76.3
(-3)
P 		122
(1.3)
P 		137.2
(2.8)
P 		63
C 121.6
(2.1)
P 		104.9
(0.3)
P 		73.6
(-3)
P 		74.5
(-2.9)
P 		105.7
(0.4)
P 		130.5
(3)
P 		57
avr 90.7
(-1.1) 		113.2
(2.1) 		97.5
(-0.2) 		77.7
(-3) 		102.4
(0.5) 		119.6
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.730
Sequence Type Exemplar sequence
Representative Public ID T22C1.6 NCBI
Target Description T22C1.6 /REP_DB=WormBase Gene ID /WP=CE24002 /TR=Q22666 /GB=CAA99923.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=myosin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059791(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059791 NCBI Caenorhabditis elegans T22C1.6 (myosin) mRNA, complete cds. 11/11 None
GENEFINDER00000000063 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7949045:7953425:1 11/11 None
SNAP00000000050 ENSEMBL cdna:SNAP chromosome:CEL140:I:7951067:7953425:1 11/11 None
T22C1.6 ENSEMBL cdna:known chromosome:CEL140:I:7950845:7953714:1 gene:T22C1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7951576-7953356(+) 98.61 98.91
Public Domain and Genome References
Gene Title myosin
Ensembl T22C1.6
Entrez Gene 172568 Entrez gene
SwissProt Q22666 EMBL-EBI
WormBase CE24002 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248471_AT expressed protein at
CANINE_2:CFAAFFX.16758.1.S1_AT similar to taxilin cfa
DROSOPHILA_2:1641692_AT dm
DROSGENOME1:151777_AT dm
CHICKEN:GGA.1266.2.S1_A_AT similar to taxilin gga
HU35KSUBA:R67290_AT taxilin alpha hs
U133_X3P:HS2.399897.1.S1_3P_AT taxilin alpha hs
U133_X3P:HS.83004.0.S1_3P_X_AT taxilin alpha hs
U133_X3P:HS.83004.0.S1_3P_AT taxilin alpha hs
HG-U133_PLUS_2:1561358_AT taxilin alpha hs
HG-U133A_2:212300_AT taxilin alpha hs
HG-U133_PLUS_2:212300_AT taxilin alpha hs
HG-U133A:212300_AT taxilin alpha hs
HG-U95AV2:38421_AT taxilin alpha hs
HG-U95D:74720_S_AT taxilin alpha hs
HUGENEFL:L15344_AT Taxilin alpha hs
HG-U133_PLUS_2:231169_AT Taxilin alpha hs
HG-U133B:231169_AT Taxilin alpha hs
HG-U133_PLUS_2:240739_AT Taxilin alpha hs
HG-U133B:240739_AT Taxilin alpha hs
HG-U95B:43534_AT Taxilin alpha hs
HG-U95D:76316_AT Taxilin alpha hs
HU35KSUBC:RC_N29877_AT Taxilin alpha hs
U133_X3P:HS.121150.0.A1_3P_AT Taxilin alpha hs
U133_X3P:HS.83004.1.S1_3P_AT Taxilin alpha hs
MG-U74BV2:112269_AT taxilin alpha mm
MG-U74BV2:111931_AT taxilin alpha mm
MG-U74CV2:137218_F_AT taxilin alpha mm
MG-U74BV2:162736_AT taxilin alpha mm
MOE430B:1434448_AT taxilin alpha mm
MOUSE430_2:1434448_AT taxilin alpha mm
MOE430B:1454861_AT taxilin alpha mm
MOUSE430_2:1454861_AT taxilin alpha mm
MOE430B:1434157_AT taxilin alpha mm
MOUSE430_2:1434157_AT taxilin alpha mm
MG-U74AV2:160624_AT Taxilin alpha (Txlna), mRNA mm
MOE430A:1426796_AT Taxilin alpha (Txlna), mRNA mm
MOUSE430A_2:1426796_AT Taxilin alpha (Txlna), mRNA mm
MOUSE430_2:1426796_AT Taxilin alpha (Txlna), mRNA mm
MU19KSUBA:TC19783_AT Taxilin alpha (Txlna), mRNA mm
MU19KSUBA:TC23634_AT Taxilin alpha (Txlna), mRNA mm
MU19KSUBB:TC31235_AT Taxilin alpha (Txlna), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAA99923 Hypothetical protein T22C1.6 [Caenorhabditis elegans] ref|NP_492192.1| T22C1.6 [Caenorhabditis elegans] 1.0E-171
blast CAA99923 Hypothetical protein T22C1.6 [Caenorhabditis elegans] ref|NP_492192.1| T22C1.6 [Caenorhabditis elegans] 1.0E-169
blast CAE63729 Hypothetical protein CBG08254 [Caenorhabditis briggsae] 1.0E-135
blast CAA99929 Hypothetical protein T22C1.5 [Caenorhabditis elegans] ref|NP_492191.1| T22C1.5 [Caenorhabditis elegans] 2.0E-60
blast CAI21150 novel protein similar to vertebrate muscle derived protein (MDP77) [Danio rerio] 2.0E-29
Sequence
Target Sequence 
>C. ELEGANS:188013_AT
agaagcaaatcggattcattagccgaagataataagaagctgagcgagaaattctctgaa
attggacatcaatacgaagaaaagatgaaagtaattgatcaacagatccagaagaaggag
aaatattgggaagagtatggaaagaccaaggatttggagattaagctgcttacagcaaag
cttgaatctgcatcgattcaagttaagaaatcaggaatggaaaaagatgaattggcgaag
attatgttggaagaaacagctcgtgttggtggagcattgaagactgaaaaagcacttcgt
gagcaagttcaagagtattctgcaaaatattctgaattgacaagttgcttgtcgaaaagt
aatgaagcatttgataagttcaaagatgaaatttcaagagtcaataagaagtgtatgcaa
gtagagaaagagggcctttcttacaaaaagaagtctgatgaggctaataaaaaagtgctt
gtgttgactatgacaaatcaagaatatgccgagaagatcgccacatcggacaagaaaatt
caaatgcttgagaacctgtgtcgcgctctccgaaaaggcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCAAATCGGATTCATTAGCCG 447 73 397 Antisense
GGATTTGGAGATTAAGCTGCTTACA 145 511 546 Antisense
ACAGCAAAGCTTGAATCTGCATCGA 142 109 568 Antisense
GGAAGAAACAGCTCGTGTTGGTGGA 578 525 645 Antisense
GTGTTGGTGGAGCATTGAAGACTGA 499 485 659 Antisense
AAAGCACTTCGTGAGCAAGTTCAAG 237 123 685 Antisense
AAAAGTGCTTGTGTTGACTATGACA 232 133 867 Antisense
ATATGCCGAGAAGATCGCCACATCG 533 21 900 Antisense
GAAGATCGCCACATCGGACAAGAAA 481 337 909 Antisense
AAATGCTTGAGAACCTGTGTCGCGC 393 119 938 Antisense
GTGTCGCGCTCTCCGAAAAGGCGAA 588 487 954 Antisense
Sequence Source Affymetrix Proprietary Database