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[188012_s_at]

Description Y47G6A.21 /REP_DB=WormBase Gene ID /WP=CE24367 /CHR=1 /FEA=Sanger Annotation /DEF=dehydrogenase (ST.LOUIS) protein_id:AAF60667.1
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 31      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 67      6grp_total > 43      4grp_total > 59      6grp_high1_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1256
1 2 3 4 range
A 1351.1
(0.9)
P 		1509.3
(2)
P 		1644
(3)
P 		808.8
(-3)
P 		835
B 1224.5
(-0.9)
P 		1713.1
(1.4)
P 		2043.4
(3)
P 		787.6
(-3)
P 		1256
C 1555.1
(1.3)
P 		1741.2
(2.6)
P 		1797.9
(3)
P 		964.7
(-3)
P 		833
avr 1376.9
(0.2) 		1654.5
(1.9) 		1828.4
(3) 		853.7
(-3) 		975

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1166
1 2 3 4 5 6 range
A 1712.1
(-1.4)
P 		1858
(-0.6)
P 		2564.7
(3)
P 		1720.2
(-1.3)
P 		1399.2
(-3)
P 		1435.1
(-2.8)
P 		1166
B 1754.5
(-0.7)
P 		1765.7
(-0.6)
P 		2164.5
(3)
P 		1667.7
(-1.4)
P 		1831
(0)
P 		1491
(-3)
P 		674
C 1986.4
(2.1)
P 		1601.2
(-1.4)
P 		2010
(2.4)
P 		1421.2
(-3)
P 		2080.6
(3)
P 		1652.8
(-0.9)
P 		659
avr 1817.7
(-0.6) 		1741.6
(-1.2) 		2246.4
(3) 		1603
(-2.4) 		1770.3
(-1) 		1526.3
(-3) 		720
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 508
1 2 3 4 range
A 492
(3)
P 		327.6
(0.4)
P 		429.8
(2)
P 		118.4
(-3)
P 		374
B 390.5
(1.4)
P 		423.1
(2)
P 		473.5
(3)
P 		167.8
(-3)
P 		306
C 514.8
(1.6)
P 		500.6
(1.4)
P 		626.6
(3)
P 		162.7
(-3)
P 		464
avr 465.8
(2.3) 		417.1
(1.5) 		510
(3) 		149.6
(-3) 		360

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 458
1 2 3 4 5 6 range
A 315.6
(-3)
P 		660.8
(3)
P 		558.5
(1.2)
P 		436.3
(-0.9)
P 		422.2
(-1.1)
P 		349.4
(-2.4)
P 		345
B 610.5
(0.4)
P 		587.7
(-0.1)
P 		525.6
(-1.3)
P 		441.7
(-3)
P 		743.9
(3)
P 		556
(-0.7)
P 		302
C 736.3
(3)
P 		488.6
(-0.3)
P 		511.6
(0)
P 		285.8
(-3)
P 		673.2
(2.2)
P 		553.3
(0.6)
P 		451
avr 554.1
(1.4) 		579
(2.1) 		531.9
(0.8) 		387.9
(-3) 		613.1
(3) 		486.2
(-0.4) 		225
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188012_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.271
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.21 NCBI
Target Description Y47G6A.21 /REP_DB=WormBase Gene ID /WP=CE24367 /CHR=1 /FEA=Sanger Annotation /DEF=dehydrogenase (ST.LOUIS) protein_id:AAF60667.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026593(11), NM_001026594(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026593 NCBI Caenorhabditis elegans Y47G6A.21 (Y47G6A.21) mRNA, complete cds. 11/11 None
NM_001026594 NCBI Caenorhabditis elegans Y47G6A.22 (Y47G6A.22) mRNA, complete cds. 11/11 None
SNAP00000033991 ENSEMBL cdna:SNAP chromosome:CEL140:I:3558085:3559798:-1 11/11 None
GENEFINDER00000034068 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3558100:3559798:-1 11/11 None
SNAP00000033992 ENSEMBL cdna:SNAP chromosome:CEL140:I:3559996:3562846:-1 11/11 None
GENEFINDER00000034073 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3559996:3562846:-1 9/11 None
Y47G6A.21.1 ENSEMBL cdna:known chromosome:CEL140:I:3551967:3559811:-1 gene:Y47G6A.21 11/11 None
Y47G6A.21.2 ENSEMBL cdna:known chromosome:CEL140:I:3551967:3559809:-1 gene:Y47G6A.21 11/11 None
Y47G6A.22 ENSEMBL cdna:known chromosome:CEL140:I:3559931:3562853:-1 gene:Y47G6A.22 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3558084-3559798(-) 97.4 100.0
Public Domain and Genome References
Gene Title

Ensembl Y47G6A.21
Y47G6A.22
Entrez Gene 171924 Entrez gene
171925 Entrez gene
SwissProt Q9BL81 EMBL-EBI
Q8MXS8 EMBL-EBI
WormBase CE37066 Wormbase
CE24368 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18567_AT short-chain dehydrogenase/reductase (SDR) family protein at
ATH1-121501:266761_AT short-chain dehydrogenase/reductase (SDR) family protein at
DROSOPHILA_2:1634041_AT dm
DROSOPHILA_2:1633503_AT dm
DROSGENOME1:149345_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_001021764 Y47G6A.21 [Caenorhabditis elegans] gb|AAK29888.4| Hypothetical protein Y47G6A.21 [Caenorhabditis elegans] 1.0E-138
blast NP_001021765 Y47G6A.22 [Caenorhabditis elegans] gb|AAM43788.1| Hypothetical protein Y47G6A.22 [Caenorhabditis elegans] 1.0E-135
blast CAE68954 Hypothetical protein CBG14934 [Caenorhabditis briggsae] 1.0E-129
blast CAE68953 Hypothetical protein CBG14933 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 3.0E-68
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 1.9E-66
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 1.2E-52
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.7E-11
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.0E-31
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 4.2E-48
Sequence
Target Sequence 
>C. ELEGANS:188012_S_AT
gttctcgattctggaattgaagtctacgatgagctaatgaatgtgaatgttcgtagtttg
atccgcctgacacgtgcagctcttccacatattattacaacaaaaggaactgttgtcaat
gtcagcagtattaatggaccgtgccctttcgctggggtcacatattactgtatgtccaaa
tcggccgtagatcaattcacaaaatgtttggctctggaaatggctccgaatggagttcgt
gttaatgctgtttgcccagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTCGATTCTGGAATTGAAGTCT 199 441 526 Antisense
GGAATTGAAGTCTACGATGAGCTAA 541 533 538 Antisense
GTCTACGATGAGCTAATGAATGTGA 108 445 547 Antisense
AATGTTCGTAGTTTGATCCGCCTGA 336 163 571 Antisense
GCAGCTCTTCCACATATTATTACAA 676 313 601 Antisense
AAAGGAACTGTTGTCAATGTCAGCA 449 119 628 Antisense
TCAGCAGTATTAATGGACCGTGCCC 404 621 647 Antisense
TCGGCCGTAGATCAATTCACAAAAT 274 551 706 Antisense
AATGGCTCCGAATGGAGTTCGTGTT 98 161 744 Antisense
GAGTTCGTGTTAATGCTGTTTGCCC 647 397 758 Antisense
TTCGTGTTAATGCTGTTTGCCCAGG 405 691 761 Antisense
Sequence Source Affymetrix Proprietary Database