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[188011_at]

Description Y47G6A.21 /REP_DB=WormBase Gene ID /WP=CE24367 /CHR=1 /FEA=Sanger Annotation /DEF=dehydrogenase (ST.LOUIS) protein_id:AAF60667.1
Cluster 6grp_high1_10_10 > 01      4grp_high_8_8 > 36      6grp_total > 08      4grp_total > 44      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 144.9
(2.3)
P 		150.9
(3)
P 		135.9
(1.3)
P 		97
(-3)
P 		54
B 155
(1.5)
P 		181.1
(3)
P 		128.8
(0)
P 		74.9
(-3)
M 		106
C 156
(0.7)
P 		200.9
(3)
P 		85.8
(-3)
A 		170
(1.4)
P 		115
avr 152
(0.6) 		177.6
(3) 		116.8
(-2.7) 		114
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 139.6
(1.9)
P 		140.1
(1.9)
P 		155.3
(3)
P 		110.8
(-0.1)
P 		70.4
(-3)
P 		138.1
(1.8)
P 		85
B 167.6
(3)
P 		99.9
(-0.6)
P 		91.8
(-1)
A 		96
(-0.8)
P 		100.4
(-0.6)
P 		54.2
(-3)
P 		113
C 183.8
(3)
P 		69.6
(-3)
A 		146.3
(1)
P 		146
(1)
P 		184
(3)
P 		93.4
(-1.8)
P 		114
avr 163.7
(3) 		103.2
(-2.3) 		131.1
(0.1) 		117.6
(-1) 		118.3
(-1) 		95.2
(-3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 52.8
(3)
P 		32.8
(-0.1)
P 		35.5
(0.3)
P 		14.2
(-3)
P 		39
B 49.4
(3)
P 		44.7
(2.2)
P 		29.8
(-0.5)
P 		16
(-3)
M 		33
C 51.6
(1.7)
P 		57.8
(3)
P 		29.9
(-2.8)
A 		28.7
(-3)
P 		29
avr 51.3
(3) 		45.1
(1.8) 		31.7
(-0.7) 		19.6
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 25.7
(-2.1)
P 		49.8
(3)
P 		33.8
(-0.4)
P 		28.1
(-1.6)
P 		21.3
(-3)
P 		33.6
(-0.4)
P 		29
B 58.3
(3)
P 		33.2
(-1)
P 		22.3
(-2.7)
A 		25.4
(-2.2)
P 		40.8
(0.2)
P 		20.2
(-3)
P 		38
C 68.1
(3)
P 		21.2
(-3)
A 		37.2
(-1)
P 		29.4
(-2)
P 		59.5
(1.9)
P 		31.3
(-1.7)
P 		47
avr 50.7
(3) 		34.7
(-1.2) 		31.1
(-2.1) 		27.6
(-3) 		40.5
(0.4) 		28.4
(-2.8) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.271
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.21 NCBI
Target Description Y47G6A.21 /REP_DB=WormBase Gene ID /WP=CE24367 /CHR=1 /FEA=Sanger Annotation /DEF=dehydrogenase (ST.LOUIS) protein_id:AAF60667.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026593
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026593 NCBI Caenorhabditis elegans Y47G6A.21 (Y47G6A.21) mRNA, complete cds. None
Y47G6A.21.1 ENSEMBL cdna:known chromosome:CEL140:I:3551967:3559811:-1 gene:Y47G6A.21 None
Y47G6A.21.2 ENSEMBL cdna:known chromosome:CEL140:I:3551967:3559809:-1 gene:Y47G6A.21 None
SNAP00000033991 ENSEMBL cdna:SNAP chromosome:CEL140:I:3558085:3559798:-1 None
GENEFINDER00000034068 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3558100:3559798:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3558084-3559798(-) 97.4 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47G6A.21
Entrez Gene 171924 Entrez gene
SwissProt Q9BL81 EMBL-EBI
WormBase CE37066 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1634041_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_001021764 Y47G6A.21 [Caenorhabditis elegans] gb|AAK29888.4| Hypothetical protein Y47G6A.21 [Caenorhabditis elegans] 1.0E-138
blast CAE68954 Hypothetical protein CBG14934 [Caenorhabditis briggsae] 1.0E-129
blast NP_001021765 Y47G6A.22 [Caenorhabditis elegans] gb|AAM43788.1| Hypothetical protein Y47G6A.22 [Caenorhabditis elegans] 1.0E-115
blast NP_001021764 Y47G6A.21 [Caenorhabditis elegans] gb|AAK29888.4| Hypothetical protein Y47G6A.21 [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 3.0E-68
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 1.2E-52
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.7E-11
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.0E-31
Sequence
Target Sequence 
>C. ELEGANS:188011_AT
gatcacggatttattcggttgggtcttgccacgaaaaatgtttttgcgcggatccatagt
ttttttttcgagaaatttcccattctacccttaaaatattctaaatttcagatcaattcg
gccgggattctgcgtgccggaccagttctcgattctggaattgaagtctacgatgagcta
atgaatgtgaatgttcgtagtttgatccgcctgacacgtgcagctcttccacatattatt
acaacaaaaggaactgttgtcaatgtcagcagtattaatggaccgtgccctttcgctggg
gtcacatattactgtatgtccaaatcggccgtagatcaattcacaaaatgtttggctctg
gaaatggctccgaatggagttcgtgttaatgctgtttgcccaggagtcattgtaaccaac
attcatcgagcatctgggcagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCACGGATTTATTCGGTTGGGTC 644 415 382 Antisense
ATTTATTCGGTTGGGTCTTGCCACG 328 15 390 Antisense
GAAAAATGTTTTTGCGCGGATCCAT 260 355 414 Antisense
GCGCGGATCCATAGTTTTTTTTTCG 84 287 427 Antisense
TTCGAGAAATTTCCCATTCTACCCT 172 695 448 Antisense
TCCCATTCTACCCTTAAAATATTCT 189 597 459 Antisense
CTAAATTTCAGATCAATTCGGCCGG 693 225 482 Antisense
CTTTCGCTGGGGTCACATATTACTG 536 223 671 Antisense
TGCTGTTTGCCCAGGAGTCATTGTA 474 579 771 Antisense
GAGTCATTGTAACCAACATTCATCG 78 401 785 Antisense
ACATTCATCGAGCATCTGGGCAGGA 709 103 800 Antisense
Sequence Source Affymetrix Proprietary Database