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[188010_at]

Description Y39B6B.J /REP_DB=WormBase Gene ID /WP=CE21685 /GEN=asp-1 /TR=Q9NEV0 /GB=CAB60915.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 40      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.1
(-3)
A 		6.6
(-0)
A 		10.2
(3)
A 		5.8
(-0.7)
A 		7
B 3.1
(-3)
A 		8.3
(0.6)
A 		11.8
(3)
A 		8.2
(0.5)
A 		9
C 3.5
(-3)
A 		5
(-0.6)
A 		7.2
(3)
A 		6.3
(1.5)
A 		4
avr 3.2
(-3) 		6.6
(0.1) 		9.7
(3) 		6.8
(0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 4.6
(-2.7)
A 		3.7
(-3)
A 		8.3
(-1.7)
A 		24.6
(3)
A 		12.5
(-0.5)
A 		8.1
(-1.7)
A 		21
B 6.3
(-1.3)
A 		2.5
(-3)
A 		9.3
(-0)
A 		8.9
(-0.2)
A 		16.2
(3)
A 		5.8
(-1.6)
A 		14
C 3.2
(-3)
A 		3.7
(-2.9)
A 		3.5
(-3)
A 		5.8
(-2.6)
A 		6.8
(-2.4)
A 		40.5
(3)
A 		37
avr 4.7
(-2.4) 		3.3
(-3) 		7
(-1.5) 		13.1
(1) 		11.8
(0.4) 		18.1
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.1
(-2.1)
A 		1.4
(-1.1)
A 		2.7
(3)
A 		0.8
(-3)
A 		2
B 1
(-3)
A 		2
(0.5)
A 		2.7
(3)
A 		1.8
(-0.2)
A 		2
C 1.2
(-2.6)
A 		1.5
(-1.3)
A 		2.5
(3)
A 		1.1
(-3)
A 		1
avr 1.1
(-3) 		1.6
(-1) 		2.6
(3) 		1.2
(-2.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.3
(-2.5)
A 		1.8
(-2)
A 		6.2
(3)
A 		3.8
(0.3)
A 		2
(-1.8)
A 		5
B 2.2
(-1.6)
A 		0.8
(-3)
A 		2.3
(-1.4)
A 		2.4
(-1.3)
A 		6.6
(3)
A 		2.2
(-1.6)
A 		6
C 1.2
(-2.9)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		1.2
(-2.9)
A 		2.2
(-2.4)
A 		13.6
(3)
A 		13
avr 1.4
(-2.6) 		1.1
(-3) 		1.7
(-2.3) 		3.3
(-0.3) 		4.2
(0.9) 		5.9
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188010_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19455
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.J NCBI
Target Description Y39B6B.J /REP_DB=WormBase Gene ID /WP=CE21685 /GEN=asp-1 /TR=Q9NEV0 /GB=CAB60915.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171583(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171583 NCBI Caenorhabditis elegans Y39B6A.24 (Y39B6A.24) mRNA, complete cds. 11/11 None
SNAP00000030540 ENSEMBL cdna:SNAP chromosome:CEL140:V:19038326:19045178:-1 11/11 None
GENEFINDER00000030728 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19038326:19045178:-1 11/11 None
Y39B6A.24.1 ENSEMBL cdna:known chromosome:CEL140:V:19038326:19039893:-1 gene:Y39B6A.24 11/11 None
Y39B6A.24.2 ENSEMBL cdna:known chromosome:CEL140:V:19038326:19039895:-1 gene:Y39B6A.24 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19038325-19045178(-) 90.96 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.24
Entrez Gene 180250 Entrez gene
SwissProt Q8MYN5 EMBL-EBI
WormBase CE29865 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
4194 pepsin A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD31821 Hypothetical protein Y39B6A.24 [Caenorhabditis elegans] ref|NP_741673.1| Y39B6A.24 [Caenorhabditis elegans] 0.0
blast T45036 hypothetical protein Y39B6B.j [imported] - Caenorhabditis elegans 0.0
blast CAD31820 Hypothetical protein Y39B6A.23 [Caenorhabditis elegans] ref|NP_741674.1| Y39B6A.23 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 3.4E-79
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 2.3E-89
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 3.4E-79
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 4.0E-74
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 3.4E-79
Sequence
Target Sequence 
>C. ELEGANS:188010_AT
ggatcggctgggatgattacctacgggggaattgatacgaagaactgtgatgctggggtc
acttatgttccgctgactgcgaagacgtattggcagtttaagatggatgggtttgcggtt
gggacttatagtcagtatgggtacaatcaggtaatttccgacacgggttcctcctggatc
agtgcaccatatgccatgataaacgacattgctacccagacacatgccacgtgggatgaa
atgaatgaaatctacaccgtcaaatgctccaccatgaaaacacaacctgacctggttttt
accatcgggggagccctatttcctgtaaaatctgtcgaatatattcttgatattggactt
gatgaaggaaaatgtgctctcgcaatttcaccactgatggcttccggattcggtccttca
tggattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCGGCTGGGATGATTACCTACG 154 509 1987 Antisense
TGATGCTGGGGTCACTTATGTTCCG 80 561 2034 Antisense
TATGTTCCGCTGACTGCGAAGACGT 209 655 2050 Antisense
GATGGGTTTGCGGTTGGGACTTATA 199 409 2092 Antisense
TCCTCCTGGATCAGTGCACCATATG 492 593 2155 Antisense
ATAAACGACATTGCTACCCAGACAC 424 23 2185 Antisense
CAACCTGACCTGGTTTTTACCATCG 92 187 2269 Antisense
GGAGCCCTATTTCCTGTAAAATCTG 370 521 2296 Antisense
GAAAATGTGCTCTCGCAATTTCACC 558 353 2354 Antisense
ATTTCACCACTGATGGCTTCCGGAT 46 17 2371 Antisense
TCCGGATTCGGTCCTTCATGGATTT 303 593 2389 Antisense
Sequence Source Affymetrix Proprietary Database