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[188009_at]

Description T02C5.5 /REP_DB=WormBase Gene ID /WP=CE23940 /GEN=unc-2 /TR=Q22098 /GB=AAB36868.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 29      6grp_cgc > 23      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 83.2
(0.6)
P 		64.5
(-0.3)
A 		10.1
(-3)
A 		130.5
(3)
P 		120
B 82.7
(3)
P 		48.9
(0.4)
A 		4.8
(-3)
A 		40.6
(-0.2)
A 		78
C 91.4
(1.1)
P 		73.6
(-0.3)
A 		41.7
(-3)
A 		113.6
(3)
A 		72
avr 85.8
(2.3) 		62.3
(0.4) 		18.9
(-3) 		94.9
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 45.9
(2.5)
A 		49.2
(3)
A 		33
(0.6)
A 		29.7
(0.1)
P 		9
(-3)
A 		29.6
(0.1)
P 		40
B 50.1
(3)
P 		19.7
(-0.8)
A 		45.3
(2.4)
A 		6.2
(-2.5)
A 		14.2
(-1.5)
A 		2.1
(-3)
A 		48
C 58.4
(2.9)
P 		58.9
(3)
P 		11
(-3)
A 		36.8
(0.2)
A 		25.3
(-1.2)
A 		30.1
(-0.6)
A 		48
avr 51.5
(3) 		42.6
(1.5) 		29.8
(-0.7) 		24.2
(-1.6) 		16.2
(-3) 		20.6
(-2.3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 30.3
(3)
P 		14
(-0.5)
A 		2.6
(-3)
A 		19.1
(0.6)
P 		28
B 26.4
(3)
P 		12.1
(-0.4)
A 		1.1
(-3)
A 		8.7
(-1.2)
A 		25
C 30.2
(3)
P 		21.2
(-0.4)
A 		14.5
(-3)
A 		19.1
(-1.2)
A 		16
avr 29
(3) 		15.8
(-0.5) 		6.1
(-3) 		15.6
(-0.5) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8.5
(-0.6)
A 		17.5
(3)
A 		7.2
(-1.2)
A 		7.5
(-1.1)
P 		2.7
(-3)
A 		7.2
(-1.2)
P 		15
B 17.4
(3)
P 		6.6
(-0.9)
A 		11
(0.7)
A 		1.6
(-2.7)
A 		5.8
(-1.2)
A 		0.8
(-3)
A 		17
C 21.7
(3)
P 		18
(1.8)
P 		2.8
(-3)
A 		7.4
(-1.5)
A 		8.2
(-1.3)
A 		10.1
(-0.7)
A 		19
avr 15.9
(3) 		14
(1.9) 		7
(-2.1) 		5.5
(-3) 		5.6
(-2.9) 		6
(-2.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188009_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18301
Sequence Type Exemplar sequence
Representative Public ID T02C5.5 NCBI
Target Description T02C5.5 /REP_DB=WormBase Gene ID /WP=CE23940 /GEN=unc-2 /TR=Q22098 /GB=AAB36868.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171942, NM_171639, NM_171638, NM_001029700
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000029795 ENSEMBL cdna:SNAP chromosome:CEL140:X:2715842:2722164:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029700 7/11 Cross Hyb Matching Probes None
NM_171638 7/11 Cross Hyb Matching Probes A 
NM_171942 7/11 Cross Hyb Matching Probes A 
NM_171639 5/11 Cross Hyb Matching Probes None
T02C5.5d.3 7/11 Cross Hyb Matching Probes A 
T02C5.5b 7/11 Cross Hyb Matching Probes A 
T02C5.5d.2 7/11 Cross Hyb Matching Probes A 
T02C5.5c 7/11 Cross Hyb Matching Probes A 
T02C5.5a 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2715841-2725626(-) 97.56 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP82640 Uncoordinated protein 2, isoform b [Caenorhabditis elegans] ref|NP_741732.2| UNCoordinated family member (unc-2) [Caenorhabditis elegans] gb|AAP13107.1| high voltage activated calcium channel alpha-1 subunit [Caenorhabditis elegans] 0.0
blast AAM69092 Uncoordinated protein 2, isoform c [Caenorhabditis elegans] ref|NP_741733.1| UNCoordinated family member (unc-2) [Caenorhabditis elegans] 0.0
blast AAB36868 Uncoordinated protein 2, isoform a [Caenorhabditis elegans] ref|NP_741734.1| UNCoordinated family member (unc-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005821 EMBL-EBI Ion transport protein 6.6E-57
Pfam IPR005821 EMBL-EBI Ion transport protein 1.6E-59
Pfam IPR005821 EMBL-EBI Ion transport protein 7.2E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000029795 11 7-29,39-61,131-153,210-232,471-493,586-608,659-681,696-718,778-800,840-862,928-950
Sequence
Target Sequence 
>C. ELEGANS:188009_AT
gcggaggcttacgatcgttggtcgctgcagcgaaagctgccgaatcgcaacattcttccc
acactccacaaccgccagaggaaaccactccgataattccacaacatgcacagcagttct
cggcagcaccgacgatgagcgcacaaggatccttgcaacaaatgcagggaacgagtagtg
gcggtggtcaagtaatgcctgatacagagtgtttgaaaacagattgtataattgttcagc
gtccctattcactcttcaatagcttcgtcgacactatcaaatctggaaaacaggatggag
acgtcacagatgtgcaatatcaaagtgttgatcagcagcagtatgtttccatttcctact
cagaaaataaatgcgcagtagggcttctatgggaggcaggcgcggtttcaggatctggtg
cctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGAGGCTTACGATCGTTGGTCGC 5 293 4505 Antisense
ACCACTCCGATAATTCCACAACATG 529 85 4588 Antisense
AACATGCACAGCAGTTCTCGGCAGC 40 119 4607 Antisense
GTTCTCGGCAGCACCGACGATGAGC 542 443 4620 Antisense
GACGATGAGCGCACAAGGATCCTTG 311 379 4635 Antisense
TGTATAATTGTTCAGCGTCCCTATT 194 561 4729 Antisense
TTCACTCTTCAATAGCTTCGTCGAC 228 687 4752 Antisense
GCTTCGTCGACACTATCAAATCTGG 134 307 4766 Antisense
GCAGCAGTATGTTTCCATTTCCTAC 483 313 4839 Antisense
GCGCAGTAGGGCTTCTATGGGAGGC 634 285 4877 Antisense
GCGGTTTCAGGATCTGGTGCCTGCC 403 291 4906 Antisense
Sequence Source Affymetrix Proprietary Database