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[188008_s_at]

Description F54D7.4 /REP_DB=WormBase Gene ID /WP=CE26930 /GEN=zig-7 /TR=O44730 /GB=AAK21402.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 73      6grp_total > 74      4grp_total > 04      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2021
1 2 3 4 range
A 1005
(-1.6)
P 		972.2
(-1.7)
P 		656.4
(-3)
P 		2110.9
(3)
P 		1455
B 1122.1
(-1.3)
P 		700.6
(-2.6)
P 		555.1
(-3)
P 		2576.5
(3)
P 		2021
C 966.3
(-2.2)
P 		807.6
(-2.8)
P 		753.2
(-3)
P 		2288.7
(3)
P 		1536
avr 1031.1
(-1.6) 		826.8
(-2.4) 		654.9
(-3) 		2325.4
(3) 		1671

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 445
1 2 3 4 5 6 range
A 358.3
(-3)
P 		604.5
(0.8)
P 		622.1
(1)
P 		751
(3)
P 		472.4
(-1.3)
P 		716.8
(2.5)
P 		393
B 340.1
(-3)
P 		485.9
(-0.7)
P 		714.3
(3)
P 		479.3
(-0.8)
P 		528.9
(0)
P 		574
(0.8)
P 		374
C 501.4
(-3)
P 		565.8
(-1.6)
P 		709.4
(1.4)
P 		699.6
(1.2)
P 		516
(-2.7)
P 		785
(3)
P 		284
avr 399.9
(-3) 		552.1
(0.1) 		681.9
(2.8) 		643.3
(2) 		505.8
(-0.8) 		691.9
(3) 		292
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 421
1 2 3 4 range
A 365.9
(3)
P 		211
(-1.8)
P 		171.6
(-3)
P 		309
(1.2)
P 		194
B 357.8
(0.3)
P 		173
(-2.4)
P 		128.6
(-3)
P 		549.1
(3)
P 		421
C 319.9
(0.4)
P 		232.2
(-3)
P 		262.5
(-1.8)
P 		385.9
(3)
P 		154
avr 347.9
(1.2) 		205.4
(-2.5) 		187.6
(-3) 		414.7
(3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 66
(-3)
P 		215
(3)
P 		135.5
(-0.2)
P 		190.5
(2)
P 		142.5
(0.1)
P 		174.5
(1.4)
P 		149
B 118.4
(-3)
P 		161.7
(-0.3)
P 		173.5
(0.4)
P 		127
(-2.5)
P 		214.9
(3)
P 		214
(2.9)
P 		97
C 185.9
(-0.8)
P 		172.6
(-1.4)
P 		180.6
(-1)
P 		140.7
(-3)
P 		167
(-1.7)
P 		262.8
(3)
P 		122
avr 123.4
(-3) 		183.1
(0.8) 		163.2
(-0.5) 		152.7
(-1.1) 		174.8
(0.3) 		217.1
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188008_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1951
Sequence Type Exemplar sequence
Representative Public ID F54D7.4 NCBI
Target Description F54D7.4 /REP_DB=WormBase Gene ID /WP=CE26930 /GEN=zig-7 /TR=O44730 /GB=AAK21402.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059050(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059050 NCBI Caenorhabditis elegans 2 (Zwei) IG-domain protein family member (zig-7) (zig-7) mRNA, complete cds. 11/11 None
GENEFINDER00000033097 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4787145:4792476:-1 11/11 None
SNAP00000033089 ENSEMBL cdna:SNAP chromosome:CEL140:I:4790390:4792476:-1 11/11 None
F54D7.4 ENSEMBL cdna:known chromosome:CEL140:I:4790664:4792476:-1 gene:F54D7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4789560-4791594(-) 97.33 97.33
Public Domain and Genome References
Gene Title
Gene Symbol zig-7
Ensembl F54D7.4
Entrez Gene 172096 Entrez gene
SwissProt O44730 EMBL-EBI
WormBase CE33929 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32736 hypothetical protein F54D7.4 - Caenorhabditis elegans 1.0E-148
blast AAK21402 2 (zwei) ig-domain protein protein 7 [Caenorhabditis elegans] ref|NP_491451.2| 2 (Zwei) IG-domain protein family member (zig-7) [Caenorhabditis elegans] 1.0E-137
blast T32736 hypothetical protein F54D7.4 - Caenorhabditis elegans 1.0E-134
blast AAK21402 2 (zwei) ig-domain protein protein 7 [Caenorhabditis elegans] ref|NP_491451.2| 2 (Zwei) IG-domain protein family member (zig-7) [Caenorhabditis elegans] 1.0E-133
blast CAE60356 Hypothetical protein CBG03952 [Caenorhabditis briggsae] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.1
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.1E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.1E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033097 1 287-309
Sequence
Target Sequence 
>C. ELEGANS:188008_S_AT
tctcgactttccagcagctgtacgagtttctgaagtgttgaatgcaaggcctccacatgt
gattggtatgcgaaagctttctttcgtgaacattctttcatggatgagaattcatattac
aggtgcggaacgaagagggttacacggcgagcgaatggttctggaatgtccggttctagc
caacccagaaccaatggtgagatgggagaagaacggagaaccactaggaaactctgacag
cattgaatacgacggaaacaacttgatactgaactcgctaactgaagaccacattggaaa
gtaccgatgcatcggagacaactcattcccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCGACTTTCCAGCAGCTGTACGA 503 611 393 Antisense
GCAGCTGTACGAGTTTCTGAAGTGT 143 315 406 Antisense
AGTGTTGAATGCAAGGCCTCCACAT 480 59 426 Antisense
TGCAAGGCCTCCACATGTGATTGGT 540 575 435 Antisense
GTTACACGGCGAGCGAATGGTTCTG 481 445 531 Antisense
GGTTCTGGAATGTCCGGTTCTAGCC 201 507 549 Antisense
TCTAGCCAACCCAGAACCAATGGTG 558 613 567 Antisense
GAACCACTAGGAAACTCTGACAGCA 575 345 610 Antisense
ACAACTTGATACTGAACTCGCTAAC 297 113 650 Antisense
GAACTCGCTAACTGAAGACCACATT 606 347 663 Antisense
TGCATCGGAGACAACTCATTCCCGC 84 579 700 Antisense
Sequence Source Affymetrix Proprietary Database