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[188007_at]

Description F54D7.4 /REP_DB=WormBase Gene ID /WP=CE26930 /GEN=zig-7 /TR=O44730 /GB=AAK21402.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 99      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 82      6grp_total > 89      4grp_total > 05      6grp_highest_sub > In      6grp_cgc > 79      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1479
1 2 3 4 range
A 880.3
(1.4)
P 		511
(-2.9)
P 		499
(-3)
P 		1018.8
(3)
P 		520
B 797.5
(-1.3)
P 		444.4
(-2.7)
P 		379.8
(-3)
P 		1859
(3)
P 		1479
C 955.9
(0.2)
P 		553.8
(-3)
P 		686.5
(-1.9)
P 		1309
(3)
P 		755
avr 877.9
(-0.5) 		503.1
(-3) 		521.8
(-2.9) 		1395.6
(3) 		893

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 372
1 2 3 4 5 6 range
A 170.7
(-3)
P 		295.8
(0.1)
P 		416
(3)
P 		324.6
(0.8)
P 		355.8
(1.5)
P 		279.6
(-0.3)
P 		245
B 307.2
(-2.7)
P 		383.2
(-0.8)
P 		324.7
(-2.2)
P 		293.3
(-3)
P 		433.7
(0.4)
P 		542.2
(3)
P 		249
C 367
(0.3)
P 		472.4
(3)
P 		300.1
(-1.4)
P 		239.9
(-3)
P 		396.6
(1)
P 		409.9
(1.4)
P 		233
avr 281.6
(-3) 		383.8
(1.8) 		346.9
(0) 		285.9
(-2.8) 		395.4
(2.3) 		410.6
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 308
1 2 3 4 range
A 320.5
(3)
P 		110.9
(-3)
P 		130.5
(-2.4)
P 		149.1
(-1.9)
P 		210
B 254.3
(0.2)
P 		109.8
(-2.6)
P 		88
(-3)
P 		396.2
(3)
P 		308
C 316.4
(3)
P 		159.2
(-3)
P 		239.3
(0.1)
P 		220.7
(-0.7)
P 		157
avr 297.1
(3) 		126.6
(-3) 		152.6
(-2.1) 		255.3
(1.5) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 31.5
(-3)
P 		105.2
(2.8)
P 		90.6
(1.7)
P 		82.3
(1)
P 		107.4
(3)
P 		68.1
(-0.1)
P 		76
B 106.9
(-1.6)
P 		127.5
(-0.6)
P 		78.8
(-2.9)
P 		77.7
(-3)
P 		176.2
(1.7)
P 		202.2
(3)
P 		125
C 136
(2.5)
P 		144.1
(3)
P 		76.4
(-1.2)
P 		48.2
(-3)
P 		128.3
(2)
P 		137.2
(2.6)
P 		96
avr 91.5
(-1) 		125.6
(2) 		81.9
(-1.9) 		69.4
(-3) 		137.3
(3) 		135.8
(2.9) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188007_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1951
Sequence Type Exemplar sequence
Representative Public ID F54D7.4 NCBI
Target Description F54D7.4 /REP_DB=WormBase Gene ID /WP=CE26930 /GEN=zig-7 /TR=O44730 /GB=AAK21402.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059050
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000033097 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4787145:4792476:-1 11/11 None
SNAP00000033089 ENSEMBL cdna:SNAP chromosome:CEL140:I:4790390:4792476:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059050 8/11 Cross Hyb Matching Probes A 
F54D7.4 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4789560-4791594(-) 97.33 97.33
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32736 hypothetical protein F54D7.4 - Caenorhabditis elegans 1.0E-148
blast AAK21402 2 (zwei) ig-domain protein protein 7 [Caenorhabditis elegans] ref|NP_491451.2| 2 (Zwei) IG-domain protein family member (zig-7) [Caenorhabditis elegans] 1.0E-133
blast CAE60356 Hypothetical protein CBG03952 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.1
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.1E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033097 1 287-309
Sequence
Target Sequence 
>C. ELEGANS:188007_AT
ggggagttcacaaggctttctgatggaaaagtcttcaagggtactgtaaaccagggaaaa
gtatatctggaaatcggtaaagcatctgtaaaagtagcaggacgatatcgttgtgaagtt
cgaacacttgacaaggaaattcacagtgggaatttgattatctacatgcctcctgttctc
gactttccagcagctgtacgagtttctgaagtgttgaatgcaaggcctccacatgtgatt
ggtatgcgaaagctttctttcgtgaacattctttcatggatgagaattcatattacaggt
gcggaacgaagagggttacacggcgagcgaatggttctggaatgtccggttctagccaac
ccagaaccaatggtgagatgggagaagaacggagaaccactaggaaactctgacagcatt
gaatacgacggaaacaacttgatactgaactcgctaactgaagaccacattggaaagtac
cgatgcatcggagacaactcattcccgctcttcgtagatggaccagctataccgcatcaa
atttacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGAGTTCACAAGGCTTTCTGATG 86 499 217 Antisense
GTCTTCAAGGGTACTGTAAACCAGG 128 467 247 Antisense
TCTGGAAATCGGTAAAGCATCTGTA 660 605 282 Antisense
GATATCGTTGTGAAGTTCGAACACT 166 425 320 Antisense
AATTTGATTATCTACATGCCTCCTG 225 175 367 Antisense
GATTGGTATGCGAAAGCTTTCTTTC 218 435 453 Antisense
TCTTTCGTGAACATTCTTTCATGGA 203 613 472 Antisense
GAATTCATATTACAGGTGCGGAACG 264 325 500 Antisense
CCGCTCTTCGTAGATGGACCAGCTA 108 261 721 Antisense
TGGACCAGCTATACCGCATCAAATT 68 549 735 Antisense
AGCTATACCGCATCAAATTTACTTT 227 79 741 Antisense
Sequence Source Affymetrix Proprietary Database