[Home] | [Total List]

[188005_at]

Description F47G6.1 /REP_DB=WormBase Gene ID /WP=CE26812 /GEN=dyb-1 /TR=Q9TZI6 /GB=AAK18956.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 53      6grp_cgc > 42      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 205.1
(3)
M 		167
(1.3)
P 		99.5
(-1.7)
A 		70.3
(-3)
A 		135
B 196.8
(3)
P 		169.4
(1.9)
A 		120.2
(-0.1)
A 		47.1
(-3)
A 		150
C 212.4
(3)
A 		139.2
(0.1)
A 		117.7
(-0.7)
A 		59
(-3)
A 		153
avr 204.8
(3) 		158.5
(1.1) 		112.5
(-0.8) 		58.8
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 141.1
(0.8)
A 		190.4
(3)
M 		61.5
(-2.7)
A 		104.6
(-0.8)
M 		106.4
(-0.7)
A 		55.5
(-3)
A 		135
B 118.5
(1.7)
P 		141.2
(3)
M 		98.7
(0.6)
A 		51.6
(-2)
A 		41.8
(-2.5)
A 		33.3
(-3)
A 		108
C 194.1
(3)
M 		158.5
(1.5)
A 		137.7
(0.7)
A 		96.1
(-1)
A 		124.5
(0.2)
A 		47.5
(-3)
A 		147
avr 151.2
(2.4) 		163.4
(3) 		99.3
(-0.3) 		84.1
(-1) 		90.9
(-0.7) 		45.4
(-3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 74.7
(3)
M 		36.2
(-0.6)
P 		26
(-1.5)
A 		10.3
(-3)
A 		64
B 62.8
(3)
P 		41.8
(0.6)
A 		27.9
(-1)
A 		10
(-3)
A 		53
C 70.3
(3)
A 		40
(-0)
A 		41
(0.1)
A 		10
(-3)
A 		60
avr 69.3
(3) 		39.3
(-0) 		31.6
(-0.8) 		10.1
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 26
(-1.6)
A 		67.7
(3)
M 		13.4
(-3)
A 		26.5
(-1.6)
M 		32.1
(-0.9)
A 		13.5
(-3)
A 		54
B 41.2
(2)
P 		47
(3)
M 		24
(-1)
A 		13.7
(-2.8)
A 		17
(-2.2)
A 		12.4
(-3)
A 		35
C 72
(3)
M 		48.4
(0.5)
A 		35
(-1)
A 		19.3
(-2.6)
A 		40.3
(-0.4)
A 		15.9
(-3)
A 		56
avr 46.4
(1.8) 		54.4
(3) 		24.1
(-1.5) 		19.8
(-2.1) 		29.8
(-0.6) 		13.9
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188005_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.78
Sequence Type Exemplar sequence
Representative Public ID F47G6.1 NCBI
Target Description F47G6.1 /REP_DB=WormBase Gene ID /WP=CE26812 /GEN=dyb-1 /TR=Q9TZI6 /GB=AAK18956.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058459(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058459 NCBI Caenorhabditis elegans DYstroBrevin homolog family member (dyb-1) (dyb-1) mRNA, complete cds. 11/11 None
F47G6.1 ENSEMBL cdna:known chromosome:CEL140:I:1483084:1490474:1 gene:F47G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1483106-1488700(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dyb-1
Ensembl F47G6.1
Entrez Gene 171715 Entrez gene
SwissProt Q9Y048 EMBL-EBI
WormBase CE26812 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.17759.1.S1_AT similar to dystrobrevin alpha isoform 1 cfa
CANINE_2:CFAAFFX.27506.1.S1_S_AT similar to dystrobrevin alpha isoform 1 cfa
CANINE_2:CFAAFFX.27518.1.S1_S_AT similar to dystrobrevin alpha isoform 1 cfa
CANINE_2:CFAAFFX.27521.1.S1_S_AT similar to dystrobrevin alpha isoform 1 cfa
DROSGENOME1:143017_AT Dystrobrevin-like dm
DROSOPHILA_2:1630118_S_AT Dystrobrevin-like dm
DROSGENOME1:151751_AT Dystrobrevin-like dm
CHICKEN:GGAAFFX.24630.1.S1_AT similar to dystrobrevin alpha isoform 1; dystrophin-related protein 3 gga
CHICKEN:GGAAFFX.9678.1.S1_S_AT similar to dystrobrevin alpha isoform 1; dystrophin-related protein 3 gga
CHICKEN:GGAAFFX.9678.2.S1_AT similar to dystrobrevin alpha isoform 1; dystrophin-related protein 3 gga
HG-U95AV2:36466_AT dystrobrevin, alpha hs
HG-U133_PLUS_2:205741_S_AT dystrobrevin, alpha hs
HG-U133A:205741_S_AT dystrobrevin, alpha hs
HG-FOCUS:205741_S_AT dystrobrevin, alpha hs
HG-U133A_2:205741_S_AT dystrobrevin, alpha hs
HG-U133_PLUS_2:211493_X_AT dystrobrevin, alpha hs
HG-U133A:211493_X_AT dystrobrevin, alpha hs
HG-U133A_2:211493_X_AT dystrobrevin, alpha hs
HG-U133_PLUS_2:210736_X_AT dystrobrevin, alpha hs
HG-U133A:210736_X_AT dystrobrevin, alpha hs
HG-U133A_2:210736_X_AT dystrobrevin, alpha hs
HG-U133_PLUS_2:208430_S_AT dystrobrevin, alpha hs
HG-U133A:208430_S_AT dystrobrevin, alpha hs
HG-U133A_2:208430_S_AT dystrobrevin, alpha hs
HG-U133_PLUS_2:210091_S_AT dystrobrevin, alpha hs
HG-U133A:210091_S_AT dystrobrevin, alpha hs
HG-U133A_2:210091_S_AT dystrobrevin, alpha hs
HG-U133_PLUS_2:210611_S_AT dystrobrevin, alpha hs
HG-U133A:210611_S_AT dystrobrevin, alpha hs
HG-U133A_2:210611_S_AT dystrobrevin, alpha hs
HU35KSUBA:U46746_S_AT dystrobrevin, alpha hs
HUGENEFL:U46746_S_AT dystrobrevin, alpha hs
HU35KSUBB:RC_AA039325_AT dystrobrevin, alpha hs
HU35KSUBC:RC_F03420_AT dystrobrevin, alpha hs
HU35KSUBC:RC_AA463902_AT dystrobrevin, alpha hs
HUGENEFL:U84540_AT dystrobrevin, alpha hs
HUGENEFL:U84551_CDS2_AT dystrobrevin, alpha hs
HUGENEFL:U46744_AT dystrobrevin, alpha hs
U133_X3P:G4503410_3P_A_AT dystrobrevin, alpha hs
U133_X3P:G4503406_3P_A_AT dystrobrevin, alpha hs
U133_X3P:G1256010_3P_X_AT dystrobrevin, alpha hs
U133_X3P:G1255992_3P_A_AT dystrobrevin, alpha hs
U133_X3P:HS.13522.0.A1_3P_AT dystrobrevin, alpha hs
HG-U133_PLUS_2:227084_AT dystrobrevin, alpha hs
HG-U133B:227084_AT dystrobrevin, alpha hs
HG-U95AV2:36467_G_AT dystrobrevin, alpha hs
HG-U95AV2:36468_AT dystrobrevin, alpha hs
HG-U95AV2:36469_AT dystrobrevin, alpha hs
HG-U95AV2:36470_S_AT dystrobrevin, alpha hs
HG-U95AV2:36471_F_AT dystrobrevin, alpha hs
HG-U95B:55472_R_AT dystrobrevin, alpha hs
HG-U95C:60573_AT dystrobrevin, alpha hs
HG-U95C:65181_AT dystrobrevin, alpha hs
HG-U95E:78434_AT dystrobrevin, alpha hs
HG-U95E:78437_G_AT dystrobrevin, alpha hs
U133_X3P:HS2.384619.1.A1_3P_AT Dystrobrevin, alpha hs
HG-U133_PLUS_2:1557803_AT Dystrobrevin, alpha hs
HG-U133_PLUS_2:240125_AT Dystrobrevin, alpha hs
HG-U133B:240125_AT Dystrobrevin, alpha hs
HG-U133_PLUS_2:242802_X_AT Dystrobrevin, alpha hs
HG-U133B:242802_X_AT Dystrobrevin, alpha hs
HG-U133_PLUS_2:244142_AT Dystrobrevin, alpha hs
HG-U133B:244142_AT Dystrobrevin, alpha hs
HG-U95B:42718_I_AT Dystrobrevin, alpha hs
HG-U95B:42719_R_AT Dystrobrevin, alpha hs
HG-U95B:55296_AT Dystrobrevin, alpha hs
HG-U95C:56515_AT Dystrobrevin, alpha hs
HG-U95C:60605_AT Dystrobrevin, alpha hs
HG-U95E:69921_AT Dystrobrevin, alpha hs
HU35KSUBC:RC_N62272_AT Dystrobrevin, alpha hs
HU35KSUBC:RC_R49412_AT Dystrobrevin, alpha hs
HU35KSUBC:RC_W92799_AT Dystrobrevin, alpha hs
HU35KSUBD:RC_R45531_F_AT Dystrobrevin, alpha hs
HU35KSUBD:RC_D60329_F_AT Dystrobrevin, alpha hs
U133_X3P:HS.144534.0.A1_3P_AT Dystrobrevin, alpha hs
U133_X3P:HS.202119.0.A1_3P_AT Dystrobrevin, alpha hs
U133_X3P:HS.51574.0.A1_3P_X_AT Dystrobrevin, alpha hs
MOUSE430_2:1456069_AT dystrobrevin alpha mm
MOE430A:1456069_AT dystrobrevin alpha mm
MOUSE430A_2:1456069_AT dystrobrevin alpha mm
MG-U74AV2:92184_AT dystrobrevin alpha mm
MOE430A:1429768_AT dystrobrevin alpha mm
MOUSE430A_2:1429768_AT dystrobrevin alpha mm
MOUSE430_2:1429768_AT dystrobrevin alpha mm
MU11KSUBB:X95226_S_AT dystrobrevin alpha mm
MG-U74AV2:92183_AT dystrobrevin alpha mm
MG-U74BV2:108855_AT dystrobrevin alpha mm
MG-U74CV2:168336_AT dystrobrevin alpha mm
MOE430A:1425292_AT dystrobrevin alpha mm
MOUSE430A_2:1425292_AT dystrobrevin alpha mm
MOUSE430_2:1425292_AT dystrobrevin alpha mm
MOE430A:1427588_A_AT dystrobrevin alpha mm
MOUSE430A_2:1427588_A_AT dystrobrevin alpha mm
MOUSE430_2:1427588_A_AT dystrobrevin alpha mm
MOE430A:1419223_A_AT dystrobrevin alpha mm
MOUSE430A_2:1419223_A_AT dystrobrevin alpha mm
MOUSE430_2:1419223_A_AT dystrobrevin alpha mm
MOE430A:1426066_A_AT dystrobrevin alpha mm
MOUSE430A_2:1426066_A_AT dystrobrevin alpha mm
MOUSE430_2:1426066_A_AT dystrobrevin alpha mm
MOE430B:1447280_AT Dystrobrevin alpha (Dtna), transcript variant 2, mRNA mm
MOUSE430_2:1447280_AT Dystrobrevin alpha (Dtna), transcript variant 2, mRNA mm
MOUSE430_2:1458908_AT Dystrobrevin alpha (Dtna), transcript variant 2, mRNA mm
MOE430B:1458908_AT Dystrobrevin alpha (Dtna), transcript variant 2, mRNA mm
RAE230A:1389737_AT similar to dystrobrevin alpha isoform 1 rn
RAT230_2:1389737_AT similar to dystrobrevin alpha isoform 1 rn
RAE230B:1380964_AT Similar to dystrobrevin alpha isoform 1 rn
RAT230_2:1380964_AT Similar to dystrobrevin alpha isoform 1 rn
RAE230B:1396106_AT Similar to dystrobrevin alpha isoform 1 rn
RAT230_2:1396106_AT Similar to dystrobrevin alpha isoform 1 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18956 Dystrobrevin homolog protein 1 [Caenorhabditis elegans] ref|NP_490860.1| DYstroBrevin homolog family member (dyb-1) [Caenorhabditis elegans] sp|Q9Y048|DTN1_CAEEL Dystrobrevin-1 emb|CAA10498.1| unnamed protein product [Caenorhabditis elegans] 0.0
blast CAE74531 Hypothetical protein CBG22285 [Caenorhabditis briggsae] 0.0
blast T33512 hypothetical protein F47G6.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 1.2E-11
Sequence
Target Sequence 
>C. ELEGANS:188005_AT
atattccagctataaatcgccgacaaaacagctcgtacactcaattcacaaaagtctcca
atgtattcctgccacgtcaaccgtcggcgatgcaaacatcgatatttttaacgcaaaaat
cggtggcccggtcagcagcaaacctgctcgaccgctaaacctgaacaacatcgtcccggc
gacaccgacgacgatccgccggcaacacgctgccacgtcatcagcggactggccgacgtc
accggtacttctgccgggacaggcgtcgcatggaggagttattgatgatgagcataagct
tattgcgagatatgcagcaaagttgtcgggaagggctgattatcccctatcaaacggtcg
aagtatgaatagttcaatggtcggagacgaacggacccttattgctcaactggaagaaga
aaattcaatgatggtacgggaaatggctcgactggagagccaaacaacttccgatgacgg
gctcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTCCAGCTATAAATCGCCGACA 332 19 939 Antisense
ATCGCCGACAAAACAGCTCGTACAC 318 37 954 Antisense
CACGTCAACCGTCGGCGATGCAAAC 537 199 1011 Antisense
GCAAAAATCGGTGGCCCGGTCAGCA 31 319 1051 Antisense
CGGTCAGCAGCAAACCTGCTCGACC 631 243 1067 Antisense
CGCTAAACCTGAACAACATCGTCCC 272 255 1091 Antisense
GACAGGCGTCGCATGGAGGAGTTAT 183 369 1196 Antisense
GATTATCCCCTATCAAACGGTCGAA 550 425 1276 Antisense
GAGACGAACGGACCCTTATTGCTCA 146 393 1322 Antisense
GGTACGGGAAATGGCTCGACTGGAG 305 505 1371 Antisense
AAACAACTTCCGATGACGGGCTCGC 499 127 1400 Antisense
Sequence Source Affymetrix Proprietary Database