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[188004_at]

Description ZK563.1 /REP_DB=WormBase Gene ID /WP=CE05092 /GEN=uvt-7 /TR=Q23535 /GB=AAA81153.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 53      6grp_cgc > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 69.2
(2)
A 		27.8
(-1.5)
A 		80.4
(3)
A 		11
(-3)
A 		69
B 59
(2.3)
A 		65.5
(3)
A 		12.8
(-3)
A 		22.6
(-1.9)
A 		53
C 90.5
(1.4)
A 		105.8
(3)
A 		49.8
(-3)
A 		70.7
(-0.8)
A 		56
avr 72.9
(3) 		66.4
(2) 		47.7
(-1) 		34.8
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 71.9
(1.1)
A 		88.5
(2.6)
A 		27
(-3)
A 		57.3
(-0.2)
A 		93
(3)
A 		92.1
(2.9)
A 		66
B 90
(3)
A 		75.5
(0.3)
A 		58.4
(-2.8)
A 		62.5
(-2)
A 		72.4
(-0.2)
P 		57.2
(-3)
A 		33
C 38.3
(-1.3)
A 		104.7
(3)
A 		18.4
(-2.6)
A 		24.3
(-2.3)
A 		13
(-3)
A 		92.3
(2.2)
A 		92
avr 66.7
(0.5) 		89.6
(3) 		34.6
(-3) 		48
(-1.5) 		59.5
(-0.3) 		80.5
(2) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 25.2
(3)
A 		6
(-1.9)
A 		21
(1.9)
A 		1.6
(-3)
A 		24
B 18.8
(3)
A 		16.2
(2)
A 		3
(-3)
A 		4.8
(-2.3)
A 		16
C 30
(2.9)
A 		30.4
(3)
A 		17.3
(-1.2)
A 		11.9
(-3)
A 		19
avr 24.7
(3) 		17.5
(0.7) 		13.8
(-0.5) 		6.1
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 13.3
(-1.3)
A 		31.5
(3)
A 		5.9
(-3)
A 		14.5
(-1)
A 		28.1
(2.2)
A 		22.4
(0.9)
A 		26
B 31.3
(3)
A 		25.1
(0.8)
A 		14.2
(-3)
A 		16.5
(-2.2)
A 		29.4
(2.3)
P 		21.3
(-0.5)
A 		17
C 14.2
(-0.8)
A 		31.9
(3)
A 		4.7
(-2.9)
A 		4.9
(-2.8)
A 		4.2
(-3)
A 		30.9
(2.8)
A 		28
avr 19.6
(0.2) 		29.5
(3) 		8.3
(-3) 		12
(-2) 		20.6
(0.5) 		24.9
(1.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188004_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18221
Sequence Type Exemplar sequence
Representative Public ID ZK563.1 NCBI
Target Description ZK563.1 /REP_DB=WormBase Gene ID /WP=CE05092 /GEN=uvt-7 /TR=Q23535 /GB=AAA81153.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076185(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076185 NCBI Caenorhabditis elegans Unidentified Vitellogenin-linked Transcript family member (uvt-7) (uvt-7) mRNA, complete cds. 11/11 None
GENEFINDER00000043692 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3393851:3396550:1 11/11 None
ZK563.1 ENSEMBL cdna:known chromosome:CEL140:X:3394345:3396049:1 gene:ZK563.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3394345-3396050(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol uvt-7
Ensembl ZK563.1
Entrez Gene 192084 Entrez gene
SwissProt Q23535 EMBL-EBI
WormBase CE05092 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81153 Unidentified vitellogenin-linked transcript protein 7 [Caenorhabditis elegans] ref|NP_508586.1| Unidentified Vitellogenin-linked Transcript family member (uvt-7) [Caenorhabditis elegans] 0.0
blast AAA81153 Unidentified vitellogenin-linked transcript protein 7 [Caenorhabditis elegans] ref|NP_508586.1| Unidentified Vitellogenin-linked Transcript family member (uvt-7) [Caenorhabditis elegans] 1.0E-178
blast CAE68421 Hypothetical protein CBG14200 [Caenorhabditis briggsae] 1.0E-156
blast CAE68421 Hypothetical protein CBG14200 [Caenorhabditis briggsae] 1.0E-155
blast AAF91431 putative Na+/myo-inositol symporter [Mesembryanthemum crystallinum] 9.0E-17
blast XP_420789 PREDICTED: similar to GLUT9a [Gallus gallus] 2.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 1.0E-12
Pfam IPR005828 EMBL-EBI General substrate transporter 1.0E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508586.1 4 51-73,105-124,131-153,223-245
ZK563.1 4 51-73,105-124,131-153,223-245
GENEFINDER00000043692 4 63-85,117-136,143-165,235-257
Sequence
Target Sequence 
>C. ELEGANS:188004_AT
atcacatcagttccccatggggttactgtagcgactgttggtagactgatcaatggaata
ggacagggtatggtgcaaactgctggatcagtgatgttgtccgagcttccgccgctgaag
acaagaggaacagtgttagctacactgacaatgtgggcatgtatgggagaactcggcgga
atgacaatttcattggatgaattttttggaacaccagaactctggcaatgggcgatggga
tttcctctactcctcttactcccggctctcgtcgtcatctggcatgcgccagaatctcca
agataccttttcattgagaatcgtgaagacgaggctcgtaaagccatgtcgtactatcag
agtccagcagattgtaaacaatctatcgaggagattttgcttgaaaagcaatttactatg
gaaatgatcaaagaaaaagtcgatgaaaatggaaatactaggaaaaaggaaccagcaggg
ctactgagctcaatttgtgaacgtttgaaggatggaaggttcactcgtgcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACATCAGTTCCCCATGGGGTTA 25 27 460 Antisense
GGGGTTACTGTAGCGACTGTTGGTA 254 357 478 Antisense
GGATCAGTGATGTTGTCCGAGCTTC 383 511 544 Antisense
AGCTTCCGCCGCTGAAGACAAGAGG 554 77 563 Antisense
AATGGGCGATGGGATTTCCTCTACT 472 163 686 Antisense
TCGTCGTCATCTGGCATGCGCCAGA 339 605 728 Antisense
GAATCTCCAAGATACCTTTTCATTG 256 329 751 Antisense
GACGAGGCTCGTAAAGCCATGTCGT 425 379 787 Antisense
GCCATGTCGTACTATCAGAGTCCAG 416 281 802 Antisense
GAACCAGCAGGGCTACTGAGCTCAA 134 345 928 Antisense
AAGGATGGAAGGTTCACTCGTGCGC 333 159 967 Antisense
Sequence Source Affymetrix Proprietary Database