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[188001_s_at]

Description T09E8.2 /REP_DB=WormBase Gene ID /WP=CE13489 /GEN=him-17 /TR=Q22360 /GB=CAB01515.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 77      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 85      6grp_total > 76      4grp_total > 55      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 303
1 2 3 4 range
A 794.7
(3)
P 		682.5
(-3)
P 		723.3
(-0.8)
P 		790.1
(2.8)
P 		112
B 831.8
(1.9)
P 		634.3
(-3)
P 		877.6
(3)
P 		769.7
(0.3)
P 		243
C 937.3
(3)
P 		645.5
(-3)
P 		699.2
(-1.9)
P 		703.5
(-1.8)
P 		292
avr 854.6
(3) 		654.1
(-3) 		766.7
(0.4) 		754.4
(0) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 536
1 2 3 4 5 6 range
A 726
(-1.7)
P 		757.6
(-1.3)
P 		605.9
(-3)
P 		724.5
(-1.7)
P 		725.9
(-1.7)
P 		1141.8
(3)
P 		536
B 784.4
(1.5)
P 		612.5
(-3)
P 		804.2
(2)
P 		725.3
(-0)
P 		742.6
(0.4)
P 		841.6
(3)
P 		229
C 795.4
(-0.6)
P 		674.7
(-3)
P 		754.5
(-1.4)
P 		934.5
(2.2)
P 		790.7
(-0.7)
P 		972.5
(3)
P 		298
avr 768.6
(-1.3) 		681.6
(-3) 		721.5
(-2.2) 		794.8
(-0.8) 		753.1
(-1.6) 		985.3
(3) 		304
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 289.3
(3)
P 		148.2
(-1.9)
P 		189.1
(-0.5)
P 		115.7
(-3)
P 		174
B 265.3
(3)
P 		156.7
(-3)
P 		203.4
(-0.4)
P 		164
(-2.6)
P 		109
C 310.3
(3)
P 		185.6
(-0.9)
P 		243.7
(0.9)
P 		118.6
(-3)
P 		192
avr 288.3
(3) 		163.5
(-1.8) 		212.1
(0.1) 		132.8
(-3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 133.8
(-2.9)
P 		269.5
(2.7)
P 		132
(-3)
P 		183.8
(-0.9)
P 		219
(0.6)
P 		278
(3)
P 		146
B 272.9
(1)
P 		203.9
(-2.4)
P 		195.3
(-2.8)
P 		192.1
(-3)
P 		301.7
(2.4)
P 		313.8
(3)
P 		122
C 294.8
(1.7)
P 		205.9
(-2.2)
P 		192
(-2.8)
P 		187.9
(-3)
P 		255.9
(-0)
P 		325.6
(3)
P 		138
avr 233.8
(-0.3) 		226.4
(-0.6) 		173.1
(-3) 		187.9
(-2.3) 		258.9
(0.9) 		305.8
(3) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188001_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13265
Sequence Type Exemplar sequence
Representative Public ID T09E8.2 NCBI
Target Description T09E8.2 /REP_DB=WormBase Gene ID /WP=CE13489 /GEN=him-17 /TR=Q22360 /GB=CAB01515.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073876 NCBI Caenorhabditis elegans High Incidence of Males (increased X chromosome loss) family member (him-17) (him-17) mRNA, complete cds. 11/11 None
SNAP00000032123 ENSEMBL cdna:SNAP chromosome:CEL140:V:13179302:13182547:1 11/11 None
GENEFINDER00000032128 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13179302:13182547:1 11/11 None
T09E8.2 ENSEMBL cdna:known chromosome:CEL140:V:13179302:13182765:1 gene:T09E8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13179301-13182547(+) 98.15 100.0
Public Domain and Genome References
Gene Title
Gene Symbol him-17
Ensembl T09E8.2
Entrez Gene 179800 Entrez gene
SwissProt Q22360 EMBL-EBI
WormBase CE13489 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
12506 vesicle membrane inferred from electronic annotation QuickGO AmiGO
790 nuclear chromatin inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
3682 chromatin binding inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01515 Hypothetical protein T09E8.2 [Caenorhabditis elegans] ref|NP_506277.1| High Incidence of Males (increased X chromosome loss) family member (him-17) [Caenorhabditis elegans] 0.0
blast CAE64655 Hypothetical protein CBG09426 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:188001_S_AT
aatgtgccgcgaaccatggatctatcgttatctgtctactcgtcttgagaaaccaggaag
acactatctttgtgcatctcatttcaaccgaaactcacttcgatatcacgctggacttgg
actctggcgaagagctgcagcatgtcctgttcttgcctgtacaactgatgaagaacgaca
agaagtatgggatctaagcaagtctcaaccactttatcatccattgattctcgaaacatt
cgatgataacggatccggcagacttgactacgatgatgtcctgaactttttgggaactga
aagaatgcgccagatcgaaaccgagttgaacttccacggacgaaacgattcattgcttcg
cagagaaaatcggaaaaagaatactggacgcagcttctatgccgatatgcctaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTGCCGCGAACCATGGATCTAT 395 163 2256 Antisense
ATCTATCGTTATCTGTCTACTCGTC 629 31 2275 Antisense
ATCTTTGTGCATCTCATTTCAACCG 551 31 2321 Antisense
AACTCACTTCGATATCACGCTGGAC 461 139 2347 Antisense
GCTGGACTTGGACTCTGGCGAAGAG 553 293 2365 Antisense
GAAGAGCTGCAGCATGTCCTGTTCT 429 339 2384 Antisense
CCTGTTCTTGCCTGTACAACTGATG 469 265 2401 Antisense
AGTCTCAACCACTTTATCATCCATT 649 61 2456 Antisense
GATCCGGCAGACTTGACTACGATGA 90 417 2507 Antisense
GAATACTGGACGCAGCTTCTATGCC 272 327 2634 Antisense
AGCTTCTATGCCGATATGCCTAATA 324 79 2647 Antisense
Sequence Source Affymetrix Proprietary Database