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[188000_at]

Description W03D8.6 /REP_DB=WormBase Gene ID /WP=CE18326 /GEN=itx-1 /TR=O45000 /GB=AAK21492.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 27      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 71      6grp_total > 27      4grp_total > 44      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 522.2
(3)
P 		468.8
(0.7)
P 		384.4
(-3)
P 		445.8
(-0.3)
P 		138
B 458.2
(-0.4)
P 		542.7
(3)
P 		393
(-3)
P 		424.8
(-1.7)
P 		150
C 445.5
(-0.5)
P 		517.7
(3)
P 		401.5
(-2.6)
P 		393.4
(-3)
P 		124
avr 475.3
(1.2) 		509.7
(3) 		393
(-3) 		421.3
(-1.5) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 461.2
(3)
P 		445.4
(2.5)
P 		325.5
(-1)
P 		283.3
(-2.3)
P 		259.8
(-3)
P 		413.7
(1.6)
P 		201
B 444.3
(3)
P 		380.6
(1.2)
P 		282.4
(-1.7)
P 		310.7
(-0.9)
P 		237.7
(-3)
P 		302.6
(-1.1)
P 		207
C 516
(3)
P 		386.9
(0.4)
P 		339.2
(-0.6)
P 		217.5
(-3)
P 		370.5
(0.1)
P 		333.1
(-0.7)
P 		299
avr 473.8
(3) 		404.3
(0.9) 		315.7
(-1.7) 		270.5
(-3) 		289.3
(-2.4) 		349.8
(-0.7) 		203
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 190.1
(3)
P 		101.8
(-1.2)
P 		100.5
(-1.3)
P 		65.3
(-3)
P 		125
B 146.1
(3)
P 		134
(1.7)
P 		91.1
(-2.9)
P 		90.5
(-3)
P 		56
C 147.5
(2.9)
P 		148.8
(3)
P 		139.9
(2.4)
P 		66.3
(-3)
P 		83
avr 161.2
(3) 		128.2
(0.7) 		110.5
(-0.5) 		74
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 85
(-2)
P 		158.4
(3)
P 		70.9
(-3)
P 		71.8
(-2.9)
P 		78.4
(-2.5)
P 		100.7
(-1)
P 		88
B 154.6
(3)
P 		126.7
(1.1)
P 		68.6
(-3)
P 		82.3
(-2)
P 		96.6
(-1)
P 		112.8
(0.1)
P 		86
C 191.3
(3)
P 		118.1
(0)
P 		86.3
(-1.3)
P 		43.7
(-3)
P 		119.9
(0.1)
P 		111.5
(-0.2)
P 		148
avr 143.6
(3) 		134.4
(2.3) 		75.3
(-2.3) 		65.9
(-3) 		98.3
(-0.5) 		108.3
(0.3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188000_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.299
Sequence Type Exemplar sequence
Representative Public ID W03D8.6 NCBI
Target Description W03D8.6 /REP_DB=WormBase Gene ID /WP=CE18326 /GEN=itx-1 /TR=O45000 /GB=AAK21492.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058649 NCBI Caenorhabditis elegans InTestinal Neurexin-like family member (itx-1) (itx-1) mRNA, complete cds. 11/11 None
GENEFINDER00000016969 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2802823:2815644:1 11/11 None
W03D8.6.1 ENSEMBL cdna:known chromosome:CEL140:I:2802823:2815787:1 gene:W03D8.6 11/11 None
W03D8.6.2 ENSEMBL cdna:known chromosome:CEL140:I:2802823:2815889:1 gene:W03D8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016959 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2802822-2815644(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol itx-1
Ensembl W03D8.6
Entrez Gene 171846 Entrez gene
SwissProt O45000 EMBL-EBI
WormBase CE32737 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7155 cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16323 basolateral plasma membrane inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491050 InTestinal Neurexin-like family member (itx-1) [Caenorhabditis elegans] gb|AAK21492.3| Intestinal neurexin-like protein 1 [Caenorhabditis elegans] 0.0
blast T32934 hypothetical protein W03D8.6 - Caenorhabditis elegans 0.0
blast CAE60486 Hypothetical protein CBG04100 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 2.2E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 2.2E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491050.2 1 1428-1450
W03D8.6.1 1 1428-1450
W03D8.6.2 1 1428-1450
GENEFINDER00000016969 1 1438-1460
Sequence
Target Sequence 
>C. ELEGANS:188000_AT
gtggatcgcttatgtgggtcgtatttatcattttcgtgctcggtgtgatcttcctgatca
tcttctgcattttcatgaagtgctgcagggagaagattcatgcacgagacgatgagtact
tacacgacgaggatatacctctacatatggcgccgacgattttgagacacccacagccaa
gtccaccaccaatcaaaaaatcagcggcgagcaactacaagatcccaaacccgaacatcg
attttaataaggaaaatacgtttgactatgatgatgaggatgagtttgccggcatcgcag
acgacaatgtgacggacgatgtgacggtacgcaatgaggttgatgatagtgataatgaga
cgattcgtcatattgatgatgaagtacaggatgaggatggtatggttattgtgtcacgtc
caacacaagtaagccatctaccacaacgtgtatcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGATCGCTTATGTGGGTCGTATT 159 489 4367 Antisense
CATTTTCGTGCTCGGTGTGATCTTC 531 215 4395 Antisense
TTCCTGATCATCTTCTGCATTTTCA 290 699 4417 Antisense
AGGATATACCTCTACATATGGCGCC 657 55 4496 Antisense
TGGCGCCGACGATTTTGAGACACCC 8 543 4514 Antisense
GGCGAGCAACTACAAGATCCCAAAC 225 541 4572 Antisense
GATCCCAAACCCGAACATCGATTTT 628 415 4587 Antisense
TTGCCGGCATCGCAGACGACAATGT 195 701 4652 Antisense
GTGACGGACGATGTGACGGTACGCA 493 479 4675 Antisense
GTCACGTCCAACACAAGTAAGCCAT 419 461 4779 Antisense
GCCATCTACCACAACGTGTATCCTC 597 279 4799 Antisense
Sequence Source Affymetrix Proprietary Database