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[187998_s_at]

Description Y63D3A.5 /REP_DB=WormBase Gene ID /WP=CE20336 /GEN=tfg-1 /TR=Q9U1W1 /GB=CAB63398.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 09      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 50      6grp_total > 19      4grp_total > 50      6grp_cgc > 97      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1568
1 2 3 4 range
A 759.4
(-1.7)
P 		1900.9
(3)
P 		1486.8
(1.3)
P 		441.9
(-3)
P 		1459
B 756.5
(-1.9)
P 		1749
(3)
P 		1528.6
(1.9)
P 		522.2
(-3)
P 		1227
C 855.5
(-0.9)
P 		1823.8
(3)
P 		1415.3
(1.4)
P 		332.9
(-3)
P 		1491
avr 790.5
(-1.5) 		1824.6
(3) 		1476.9
(1.5) 		432.3
(-3) 		1392

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 787
1 2 3 4 5 6 range
A 454.9
(-0.2)
P 		650.1
(2.9)
P 		281.9
(-3)
P 		655.1
(3)
P 		558.5
(1.4)
P 		335.9
(-2.1)
P 		373
B 528.7
(1.1)
P 		206.8
(-3)
P 		401.6
(-0.5)
P 		677.4
(3)
P 		527.8
(1.1)
P 		253.7
(-2.4)
P 		471
C 924.2
(3)
P 		324.5
(-1.6)
P 		300.9
(-1.8)
P 		418
(-0.9)
P 		817
(2.2)
P 		137.7
(-3)
P 		787
avr 635.9
(3) 		393.8
(-0.7) 		328.1
(-1.7) 		583.5
(2.2) 		634.4
(3) 		242.4
(-3) 		394
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 468
1 2 3 4 range
A 276.5
(0.7)
P 		412.6
(3)
P 		388.7
(2.6)
P 		64.7
(-3)
P 		348
B 241.2
(-0.6)
P 		432
(3)
P 		354.2
(1.5)
P 		111.3
(-3)
P 		321
C 283.2
(-0.1)
P 		524.3
(3)
P 		493.3
(2.6)
P 		56.1
(-3)
P 		468
avr 267
(0) 		456.3
(3) 		412.1
(2.3) 		77.4
(-3) 		379

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 296
1 2 3 4 5 6 range
A 83.9
(-2.2)
P 		231.2
(3)
P 		61.4
(-3)
P 		166.1
(0.7)
P 		168.5
(0.8)
P 		81.8
(-2.3)
P 		170
B 183.9
(1.7)
P 		68.8
(-3)
P 		97.5
(-1.8)
P 		179.4
(1.6)
P 		214.5
(3)
P 		94.6
(-1.9)
P 		146
C 342.5
(3)
P 		99
(-1.9)
P 		76.6
(-2.4)
P 		84.1
(-2.2)
P 		264.4
(1.4)
P 		46.1
(-3)
P 		296
avr 203.4
(2.5) 		133
(-0.5) 		78.5
(-2.8) 		143.2
(-0.1) 		215.8
(3) 		74.2
(-3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187998_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1275
Sequence Type Exemplar sequence
Representative Public ID Y63D3A.5 NCBI
Target Description Y63D3A.5 /REP_DB=WormBase Gene ID /WP=CE20336 /GEN=tfg-1 /TR=Q9U1W1 /GB=CAB63398.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061061(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061061 NCBI Caenorhabditis elegans human TFG related family member (tfg-1) (tfg-1) mRNA, complete cds. 11/11 None
SNAP00000002947 ENSEMBL cdna:SNAP chromosome:CEL140:I:14101998:14112327:1 11/11 None
GENEFINDER00000002951 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14110165:14112327:1 11/11 None
Y63D3A.5.2 ENSEMBL cdna:known chromosome:CEL140:I:14109395:14112913:1 gene:Y63D3A.5 11/11 None
Y63D3A.5.1 ENSEMBL cdna:known chromosome:CEL140:I:14110165:14112913:1 gene:Y63D3A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14110095-14112258(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tfg-1
Ensembl Y63D3A.5
Entrez Gene 173277 Entrez gene
SwissProt Q9U1W1 EMBL-EBI
WormBase CE20336 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1596782_AT similar to TRK-fused gene cfa
CANINE:1583172_AT similar to TRK-fused gene cfa
CANINE_2:CFA.3431.1.A1_AT similar to TRK-fused gene cfa
CANINE_2:CFAAFFX.14773.1.S1_AT similar to TRK-fused gene cfa
CANINE_2:CFAAFFX.14773.1.S1_S_AT similar to TRK-fused gene cfa
CHICKEN:GGA.1550.1.S1_AT TRK-fused gene gga
CHICKEN:GGA.1550.1.S1_S_AT TRK-fused gene gga
CHICKEN:GGA.16776.1.S1_AT TRK-fused gene gga
HG-U133_PLUS_2:244614_AT TRK-fused gene hs
HG-U133B:244614_AT TRK-fused gene hs
HG-U133A:217839_AT TRK-fused gene hs
HG-U133_PLUS_2:217839_AT TRK-fused gene hs
HG-FOCUS:217839_AT TRK-fused gene hs
HG-U133A_2:217839_AT TRK-fused gene hs
U133_X3P:G5174718_3P_AT TRK-fused gene hs
U133_X3P:HS.209245.0.A1_3P_AT TRK-fused gene hs
U133_X3P:HS.142230.0.A1_3P_AT TRK-fused gene hs
HG-U133_PLUS_2:239385_AT TRK-fused gene hs
HG-U133B:239385_AT TRK-fused gene hs
HG-U95E:70744_AT TRK-fused gene hs
HG-U95D:77377_AT TRK-fused gene hs
HG-U95E:88110_AT TRK-fused gene hs
HG-U133A_2:221871_S_AT TRK-fused gene hs
HG-FOCUS:221871_S_AT TRK-fused gene hs
HG-U133_PLUS_2:221871_S_AT TRK-fused gene hs
HG-U133A:221871_S_AT TRK-fused gene hs
U133_X3P:HS.278572.5.A1_3P_A_AT TRK-fused gene hs
MOUSE430_2:1415887_AT Trk-fused gene mm
MOUSE430A_2:1415887_AT Trk-fused gene mm
MOE430A:1415887_AT Trk-fused gene mm
MG-U74BV2:115681_AT Trk-fused gene mm
MG-U74BV2:164839_R_AT Trk-fused gene mm
MG-U74CV2:170721_R_AT Trk-fused gene mm
MOE430B:1438053_AT Trk-fused gene mm
MOUSE430_2:1438053_AT Trk-fused gene mm
MU19KSUBB:TC26893_AT Trk-fused gene, mRNA (cDNA clone MGC:18765 IMAGE:4015300) mm
MU19KSUBB:TC34341_AT Trk-fused gene, mRNA (cDNA clone MGC:18765 IMAGE:4015300) mm
RG-U34B:RC_AA926352_AT Trk-fused gene (predicted) rn
RG-U34C:RC_AI230956_AT Trk-fused gene (predicted) rn
RAE230A:1374464_AT Trk-fused gene (predicted) rn
RAT230_2:1374464_AT Trk-fused gene (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
7601 visual perception inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63398 Hypothetical protein Y63D3A.5 [Caenorhabditis elegans] ref|NP_493462.1| human TFG related family member (tfg-1) [Caenorhabditis elegans] 1.0E-139
blast CAE71808 Hypothetical protein CBG18822 [Caenorhabditis briggsae] 5.0E-89
blast CAE71808 Hypothetical protein CBG18822 [Caenorhabditis briggsae] 6.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR000270 EMBL-EBI Octicosapeptide/Phox/Bem1p 7.8E-16
Pfam IPR000270 EMBL-EBI Octicosapeptide/Phox/Bem1p 7.8E-16
Sequence
Target Sequence 
>C. ELEGANS:187998_S_AT
tcgactccagtgcagcagcaaggatttgctccaccgcagcagtttggcgggccaccaccg
tctggaccaccatcagagtatggaggatatgctccaccacagcagcagcagcagcaattc
ggagccccaccaccgcagggagctccccagcaaggatttggagcaccgccacaagggcca
ccacagggaggaccaccacaaggatccttcggagctccaccaccccagcaattccatgct
ccatcaccacaatcgttcggagggccaccgccgccagtatcaagtgctccaggaaacttt
gcccctccaccacaatcgggaccaccgggcgcttttgctccaccaccatccgccttcgga
gcaccacaggggccgggaggcccaggaggctacggtccaccaccgccaggaggcccagga
gccccaggatcgtacggaccaccacaaggaggcccaggaggattcggaccaccacctcca
ggaggcccaggagcctacggaccaccgccaaccggattcccaccagtcggagcaccgcca
ccgggagccgccggagccccgggaggaaatccattcgcacgaggaccatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACTCCAGTGCAGCAGCAAGGAT 69 603 847 Antisense
CAGCAGCAAGGATTTGCTCCACCGC 555 203 859 Antisense
TCCACCGCAGCAGTTTGGCGGGCCA 90 589 876 Antisense
GGAGCTCCCCAGCAAGGATTTGGAG 300 521 985 Antisense
ACCACAGGGAGGACCACCACAAGGA 449 83 1026 Antisense
TCACCACAATCGTTCGGAGGGCCAC 29 625 1090 Antisense
CGCCAGTATCAAGTGCTCCAGGAAA 446 257 1118 Antisense
CAAGTGCTCCAGGAAACTTTGCCCC 499 183 1127 Antisense
CCACAGGGGCCGGGAGGCCCAGGAG 74 269 1210 Antisense
AGCCCCGGGAGGAAATCCATTCGCA 217 1 1401 Antisense
AATCCATTCGCACGAGGACCATCTG 457 167 1414 Antisense
Sequence Source Affymetrix Proprietary Database