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[187996_s_at] lipase

Description F28H7.3 /REP_DB=WormBase Gene ID /WP=CE05753 /TR=Q19891 /GB=CAA96636.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=lipase
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 32      4grp_high_8_8 > 60      6grp_highest_nonorm > 23      6grp_total > 21      4grp_total > 60      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6142
1 2 3 4 range
A 4409.7
(1.4)
P 		5674.8
(2.7)
P 		5937.6
(3)
P 		86.3
(-3)
A 		5851
B 4685.4
(1.5)
P 		4938.7
(1.8)
P 		6202.4
(3)
P 		60.5
(-3)
P 		6142
C 4342.2
(1.8)
P 		4856.9
(2.4)
P 		5406.1
(3)
P 		79.2
(-3)
P 		5327
avr 4479.1
(1.6) 		5156.8
(2.3) 		5848.7
(3) 		75.3
(-3) 		5773

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3212
1 2 3 4 5 6 range
A 2226.8
(0.4)
P 		3493.8
(3)
P 		3133.1
(2.3)
P 		2047
(0.1)
P 		1252.5
(-1.5)
P 		527.5
(-3)
P 		2966
B 1877.9
(-0.5)
P 		3739.7
(3)
P 		3154
(1.9)
P 		1786.4
(-0.7)
P 		1475.2
(-1.3)
P 		588.6
(-3)
P 		3151
C 1793.6
(-0.6)
P 		3473.8
(3)
P 		3085.6
(2.2)
P 		1946.4
(-0.3)
P 		1265.5
(-1.7)
P 		666.5
(-3)
P 		2807
avr 1966.1
(-0.2) 		3569.1
(3) 		3124.2
(2.1) 		1926.6
(-0.3) 		1331.1
(-1.5) 		594.2
(-3) 		2975
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1872
1 2 3 4 range
A 1605.6
(3)
P 		1231.8
(1.6)
P 		1552.2
(2.8)
P 		12.6
(-3)
A 		1593
B 1494.1
(3)
P 		1219.7
(1.9)
P 		1437.2
(2.8)
P 		12.9
(-3)
P 		1481
C 1437.4
(1.6)
P 		1396.4
(1.4)
P 		1884.2
(3)
P 		13.4
(-3)
P 		1871
avr 1512.4
(2.6) 		1282.6
(1.7) 		1624.5
(3) 		13
(-3) 		1612

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1116
1 2 3 4 5 6 range
A 410.5
(-1.5)
P 		1242.6
(3)
P 		682.3
(-0)
P 		519.2
(-0.9)
P 		377.9
(-1.7)
P 		128.4
(-3)
P 		1114
B 653.4
(-0.5)
P 		1244.8
(3)
P 		765.9
(0.2)
P 		473.2
(-1.5)
P 		599.3
(-0.8)
P 		219.5
(-3)
P 		1025
C 664.8
(0.2)
P 		1060
(3)
P 		785.3
(1)
P 		391.4
(-1.8)
P 		409.5
(-1.7)
P 		223.1
(-3)
P 		837
avr 576.2
(-0.7) 		1182.5
(3) 		744.5
(0.4) 		461.3
(-1.4) 		462.2
(-1.4) 		190.3
(-3) 		992
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187996_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12984
Sequence Type Exemplar sequence
Representative Public ID F28H7.3 NCBI
Target Description F28H7.3 /REP_DB=WormBase Gene ID /WP=CE05753 /TR=Q19891 /GB=CAA96636.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=lipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073342 NCBI Caenorhabditis elegans F28H7.3 (lipase) mRNA, complete cds. 11/11 None
SNAP00000038692 ENSEMBL cdna:SNAP chromosome:CEL140:V:10752253:10753286:-1 11/11 None
GENEFINDER00000038706 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10752253:10753286:-1 11/11 None
F28H7.3 ENSEMBL cdna:known chromosome:CEL140:V:10752192:10753315:-1 gene:F28H7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10752252-10753286(-) 100.0 100.0
Public Domain and Genome References
Gene Title lipase
Ensembl F28H7.3
Entrez Gene 179490 Entrez gene
SwissProt Q19891 EMBL-EBI
WormBase CE05753 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96636 Hypothetical protein F28H7.3 [Caenorhabditis elegans] ref|NP_505743.1| F28H7.3 [Caenorhabditis elegans] 1.0E-164
blast CAE64879 Hypothetical protein CBG09691 [Caenorhabditis briggsae] 1.0E-153
blast CAE62049 Hypothetical protein CBG06065 [Caenorhabditis briggsae] 1.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 3.8E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505743.1 1 5-27
F28H7.3 1 5-27
SNAP00000038692 1 5-27
GENEFINDER00000038706 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:187996_S_AT
aggatgactttgcaactcttctggccgcaaaccctggatatgaagtttgggtgtctggac
actctctcggaggatcactcgcttcgctcgcagcatcttacgtcatcggaacaaaaatgg
ttgatggatcccgtgtgaaacttgtcacctacggagaaccacgtaccggaaacaaggatt
atgctcatgctcacgataatcaacttgcattctcttatcgtgtcacacataaccgtgatg
ttgttccacacgttccaaatgaggactttatgggatattaccacaacaagtatgaggtct
attaccgtgagaatatgaagagcggtgcaaaatttactatctgcaacggtgatgaagata
acggatgctctgatgggctctggatcactacatcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGATGACTTTGCAACTCTTCTGGC 13 57 437 Antisense
TCTGGCCGCAAACCCTGGATATGAA 486 607 456 Antisense
GTTTGGGTGTCTGGACACTCTCTCG 624 451 481 Antisense
TCGCAGCATCTTACGTCATCGGAAC 529 599 524 Antisense
GATGGATCCCGTGTGAAACTTGTCA 238 407 559 Antisense
AACTTGTCACCTACGGAGAACCACG 397 137 575 Antisense
ATGCTCATGCTCACGATAATCAACT 52 43 617 Antisense
CAACTTGCATTCTCTTATCGTGTCA 205 189 637 Antisense
ACCGTGATGTTGTTCCACACGTTCC 165 87 668 Antisense
TAACGGATGCTCTGATGGGCTCTGG 358 639 795 Antisense
TGGGCTCTGGATCACTACATCAATC 112 555 810 Antisense
Sequence Source Affymetrix Proprietary Database