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[187995_s_at]

Description B0336.1 /REP_DB=WormBase Gene ID /WP=CE26743 /GEN=wrm-1 /TR=Q10953 /GB=AAK18863.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 76      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 90      6grp_total > 67      4grp_total > 30      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 136.8
(3)
P 		101.5
(-3)
P 		108
(-1.9)
P 		132.9
(2.3)
P 		35
B 112.3
(0.3)
P 		144.1
(3)
P 		72.5
(-3)
P 		132.8
(2.1)
P 		72
C 196.7
(3)
P 		100.6
(-3)
P 		145.9
(-0.2)
P 		145.2
(-0.2)
P 		96
avr 148.6
(3) 		115.4
(-2) 		108.8
(-3) 		137
(1.3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 83.8
(-3)
P 		159.4
(0.2)
P 		149.2
(-0.3)
P 		88.7
(-2.8)
P 		144.9
(-0.4)
P 		227.4
(3)
P 		144
B 153.5
(-1.3)
P 		164.3
(-0.9)
P 		111.6
(-2.8)
P 		190.2
(0.1)
P 		105.2
(-3)
P 		271.3
(3)
P 		166
C 145.7
(-1.5)
P 		177.5
(-0.5)
P 		112.7
(-2.5)
P 		97.5
(-3)
P 		150.2
(-1.3)
P 		288.3
(3)
P 		191
avr 127.7
(-2.9) 		167.1
(-1.1) 		124.5
(-3) 		125.5
(-3) 		133.4
(-2.6) 		262.3
(3) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 49.8
(3)
P 		22
(-2.5)
P 		28.2
(-1.3)
P 		19.4
(-3)
P 		30
B 35.8
(3)
P 		35.6
(2.9)
P 		16.8
(-3)
P 		28.3
(0.6)
P 		19
C 65.1
(3)
P 		28.9
(-2.3)
P 		50.9
(0.9)
P 		24.5
(-3)
P 		41
avr 50.2
(3) 		28.8
(-1.9) 		32
(-1.2) 		24.1
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 15.4
(-3)
P 		56.7
(3)
P 		32.5
(-0.5)
P 		22.5
(-2)
P 		43.7
(1.1)
P 		55.4
(2.8)
P 		41
B 53.4
(-0.9)
P 		54.7
(-0.8)
P 		27.1
(-3)
P 		50.4
(-1.1)
P 		42.8
(-1.7)
P 		101.2
(3)
P 		74
C 54
(-0.3)
P 		54.1
(-0.3)
P 		28.7
(-2.3)
P 		19.6
(-3)
P 		48.6
(-0.7)
P 		96.5
(3)
P 		77
avr 40.9
(-1.7) 		55.2
(-0.2) 		29.4
(-3) 		30.8
(-2.8) 		45
(-1.3) 		84.4
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187995_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7161
Sequence Type Exemplar sequence
Representative Public ID B0336.1 NCBI
Target Description B0336.1 /REP_DB=WormBase Gene ID /WP=CE26743 /GEN=wrm-1 /TR=Q10953 /GB=AAK18863.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065835 NCBI Caenorhabditis elegans Worm aRMadillo family member (wrm-1) (wrm-1) mRNA, complete cds. 11/11 A 
B0336.1.1 ENSEMBL cdna:known chromosome:CEL140:III:5722793:5727050:1 gene:B0336.1 11/11 None
B0336.1.2 ENSEMBL cdna:known chromosome:CEL140:III:5722798:5726698:1 gene:B0336.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5722829-5726220(+) 97.62 100.0
Public Domain and Genome References
Gene Title
Gene Symbol wrm-1
Ensembl B0336.1
Entrez Gene 175802 Entrez gene
SwissProt Q10953 EMBL-EBI
WormBase CE26743 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
45944 positive regulation of transcription from RNA polymerase II promoter inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3713 transcription coactivator activity inferred from direct assay QuickGO AmiGO
8134 transcription factor binding inferred from physical interaction QuickGO AmiGO
5515 protein binding inferred from physical interaction QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18863 Worm armadillo protein 1 [Caenorhabditis elegans] ref|NP_498236.1| Worm aRMadillo family member (wrm-1) [Caenorhabditis elegans] gb|AAC47748.1| wrm-1 gene product [Caenorhabditis elegans] 0.0
blast T15342 hypothetical protein B0336.1 - Caenorhabditis elegans 0.0
blast CAE64327 Hypothetical protein CBG09006 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187995_S_AT
cattgagacggttcctgcttttgctgatccgtttgttgatctacttggaacaacaaatga
gccactaccaattttattgcttcaaagagcattccagagtttggacgaatggcggaaaac
tagcgttgaaatgatgaattgtgacggtagaagtgctgagcagagaagagaattagatga
cagacgaaaagatcacgaagatattgtaaaacgatctgtgggacttttaacgaatctttg
tagtcaggcaaatccaagatttttccacagtttgaagctagtattgacaaatggcacgct
aaaccccttccaatggctgacacatgagatgagtgacggtattctgcaagagtggctagc
attcattttgtcaatttgtagtcgtgacgagtcactgcaaacttttatgatgtacagatt
cctggaacaggcaaaaatgactgaagcattctttgcggaactcaaggctcgtcggcagaa
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTGAGACGGTTCCTGCTTTTGCT 666 215 1809 Antisense
TGCTTTTGCTGATCCGTTTGTTGAT 264 579 1824 Antisense
AGCCACTACCAATTTTATTGCTTCA 582 83 1868 Antisense
ACGATCTGTGGGACTTTTAACGAAT 445 91 2019 Antisense
AATCCAAGATTTTTCCACAGTTTGA 114 167 2059 Antisense
CCCCTTCCAATGGCTGACACATGAG 328 261 2112 Antisense
GATGAGTGACGGTATTCTGCAAGAG 700 409 2136 Antisense
AAGAGTGGCTAGCATTCATTTTGTC 299 155 2156 Antisense
GTGACGAGTCACTGCAAACTTTTAT 75 483 2192 Antisense
GAAGCATTCTTTGCGGAACTCAAGG 61 341 2251 Antisense
GAACTCAAGGCTCGTCGGCAGAATT 393 349 2266 Antisense
Sequence Source Affymetrix Proprietary Database