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[187989_at]

Description F45E4.9 /REP_DB=WormBase Gene ID /WP=CE10508 /GEN=hmg-5 /TR=Q94234 /GB=AAK29819.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 57      4grp_high_8_8 > 26      6grp_highest_nonorm > 73      6grp_total > 64      4grp_total > 37      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 446
1 2 3 4 range
A 517.7
(3)
P 		463.5
(1.5)
P 		306.3
(-3)
P 		323
(-2.5)
P 		211
B 629.6
(3)
P 		458.7
(0.7)
P 		183.7
(-3)
P 		354.6
(-0.7)
P 		446
C 558.7
(3)
P 		377.5
(-0.7)
P 		267.7
(-3)
P 		384.5
(-0.6)
P 		291
avr 568.7
(3) 		433.2
(0.4) 		252.6
(-3) 		354
(-1.1) 		316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 385
(-3)
P 		544
(-0.1)
P 		494.7
(-1)
P 		717.9
(3)
P 		476.1
(-1.4)
P 		614.1
(1.1)
P 		333
B 356.2
(-3)
P 		431.4
(-1.5)
P 		654
(3)
P 		461
(-0.9)
P 		487.6
(-0.4)
P 		520
(0.3)
P 		298
C 591.5
(-0.7)
P 		530.6
(-2.4)
P 		729.7
(3)
P 		541.3
(-2.1)
P 		507.6
(-3)
P 		668.3
(1.3)
P 		222
avr 444.2
(-3) 		502
(-1.1) 		626.1
(3) 		573.4
(1.3) 		490.4
(-1.5) 		600.8
(2.2) 		182
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 188.5
(3)
P 		100.6
(-0.7)
P 		80.1
(-1.6)
P 		47.3
(-3)
P 		141
B 200.8
(3)
P 		113.3
(-0.3)
P 		42.6
(-3)
P 		75.6
(-1.7)
P 		158
C 184.9
(3)
P 		108.5
(-0.8)
P 		93.3
(-1.6)
P 		64.8
(-3)
P 		120
avr 191.4
(3) 		107.5
(-0.9) 		72
(-2.6) 		62.6
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 71
(-3)
P 		193.5
(3)
P 		107.7
(-1.2)
P 		182.1
(2.4)
P 		143.7
(0.6)
P 		149.5
(0.8)
P 		123
B 123.9
(-2.9)
P 		143.6
(-1.3)
P 		158.8
(-0.1)
P 		122.1
(-3)
P 		198.1
(3)
P 		193.9
(2.7)
P 		76
C 219.2
(2.8)
P 		161.9
(-0.2)
P 		185.7
(1)
P 		108.9
(-3)
P 		164.3
(-0.1)
P 		223.7
(3)
P 		115
avr 138
(-3) 		166.3
(0.3) 		150.7
(-1.5) 		137.7
(-3) 		168.7
(0.6) 		189
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187989_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9750
Sequence Type Exemplar sequence
Representative Public ID F45E4.9 NCBI
Target Description F45E4.9 /REP_DB=WormBase Gene ID /WP=CE10508 /GEN=hmg-5 /TR=Q94234 /GB=AAK29819.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068844 NCBI Caenorhabditis elegans HMG family member (hmg-5) (hmg-5) mRNA, complete cds. 11/11 None
SNAP00000024170 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7645071:7646202:-1 11/11 None
GENEFINDER00000024174 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7645071:7646202:-1 11/11 None
F45E4.9 ENSEMBL cdna:known chromosome:CEL140:IV:7645061:7646203:-1 gene:F45E4.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7645076-7646208(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol hmg-5
Ensembl F45E4.9
Entrez Gene 177543 Entrez gene
SwissProt Q94234 EMBL-EBI
WormBase CE10508 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29819 Hmg protein 5 [Caenorhabditis elegans] ref|NP_501245.1| HMG family member (hmg-5) [Caenorhabditis elegans] 8.0E-97
blast CAE61933 Hypothetical protein CBG05930 [Caenorhabditis briggsae] 1.0E-52
blast CAH25649 mitochondrial transcription factor A [Presbytis cristata] 6.0E-12
Sequence
Target Sequence 
>C. ELEGANS:187989_AT
atttcaatgagattcttcgctacgaaagtagttgctccacgtgcttctgtcgcagcttca
actccacaagtccctcttggaatgaatatcaatccatacgcaatgttcatcaaagaaaac
ttcaaagctaacacttccgatatgaagagaactgatttgatgaaagagttgtctggaaag
tggaaggcattgagtatctctgaaaaagataagtacacagaactctcgaaaaattacaat
gctcaaaagctggatgacttcatgaaactatctactgaggaacagaaaaaattggtggat
tctgcaaaagaaaagaaagcggaaagagcaagtagacgccacgcaaaggaacgccgtgaa
aaaaggaagcaatctggacgtccaagtgttcctccaagtgcttatgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCAATGAGATTCTTCGCTACGA 61 17 25 Antisense
ACGAAAGTAGTTGCTCCACGTGCTT 110 93 46 Antisense
AACTCCACAAGTCCCTCTTGGAATG 150 143 84 Antisense
ATCAATCCATACGCAATGTTCATCA 280 27 112 Antisense
AAACTTCAAAGCTAACACTTCCGAT 27 129 141 Antisense
AGTGGAAGGCATTGAGTATCTCTGA 590 57 203 Antisense
GGATGACTTCATGAAACTATCTACT 36 515 276 Antisense
GGAAAGAGCAAGTAGACGCCACGCA 546 527 345 Antisense
TAGACGCCACGCAAAGGAACGCCGT 356 649 357 Antisense
AATCTGGACGTCCAAGTGTTCCTCC 232 169 395 Antisense
AGTGTTCCTCCAAGTGCTTATGCAC 425 59 409 Antisense
Sequence Source Affymetrix Proprietary Database