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[187987_at]

Description B0511.1 /REP_DB=WormBase Gene ID /WP=CE26851 /GEN=fkb-7 /TR=O61826 /GB=AAC17657.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 72      6grp_highest_nonorm > 54      6grp_total > 71      4grp_total > 49      6grp_highest_sub > 04      6grp_cgc > 85      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 74
(-3)
A 		332.2
(3)
A 		272.9
(1.6)
P 		114.2
(-2.1)
A 		258
B 72.3
(-3)
A 		196.6
(0.8)
P 		266.1
(3)
P 		100.8
(-2.1)
A 		194
C 151.5
(-3)
M 		260.9
(2)
P 		282.3
(3)
M 		154.6
(-2.9)
A 		131
avr 99.3
(-3) 		263.2
(2.6) 		273.8
(3) 		123.2
(-2.2) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2788
1 2 3 4 5 6 range
A 244.4
(-2.9)
P 		206.3
(-3)
P 		1866.9
(1.1)
P 		2639.6
(3)
P 		1231.9
(-0.5)
P 		298.1
(-2.8)
P 		2433
B 209.7
(-3)
P 		197.2
(-3)
P 		2048.9
(1.2)
P 		2815.5
(3)
P 		1113.8
(-0.9)
P 		329.5
(-2.7)
P 		2618
C 235.5
(-3)
P 		318.2
(-2.8)
P 		1677.9
(0.1)
P 		2984.9
(3)
P 		948.2
(-1.4)
P 		325.6
(-2.8)
P 		2749
avr 229.9
(-3) 		240.6
(-3) 		1864.6
(0.8) 		2813.3
(3) 		1098
(-1) 		317.7
(-2.8) 		2583
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 27
(-1.9)
A 		72.1
(3)
A 		71.3
(2.9)
P 		16.7
(-3)
A 		55
B 23.1
(-2.8)
A 		48.6
(1)
P 		61.7
(3)
P 		21.5
(-3)
A 		40
C 50.1
(-1)
M 		75
(1.1)
P 		98.4
(3)
M 		26.1
(-3)
A 		72
avr 33.4
(-1.7) 		65.2
(1.7) 		77.1
(3) 		21.4
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 701
1 2 3 4 5 6 range
A 45.1
(-3)
P 		73.4
(-2.7)
P 		406.6
(0.5)
P 		669.5
(3)
P 		371.7
(0.1)
P 		72.6
(-2.7)
P 		624
B 73
(-2.9)
P 		65.6
(-3)
P 		497.5
(0.8)
P 		745.7
(3)
P 		452.5
(0.4)
P 		122.9
(-2.5)
P 		680
C 87.3
(-3)
P 		97.1
(-2.9)
P 		427
(1)
P 		600.3
(3)
P 		306.8
(-0.4)
P 		109
(-2.7)
P 		513
avr 68.5
(-3) 		78.7
(-2.9) 		443.7
(0.7) 		671.8
(3) 		377
(0.1) 		101.5
(-2.7) 		603
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187987_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1698
Sequence Type Exemplar sequence
Representative Public ID B0511.1 NCBI
Target Description B0511.1 /REP_DB=WormBase Gene ID /WP=CE26851 /GEN=fkb-7 /TR=O61826 /GB=AAC17657.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060391(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060391 NCBI Caenorhabditis elegans FK506-Binding protein family member (fkb-7) (fkb-7) mRNA, complete cds. 11/11 None
B0511.1 ENSEMBL cdna:known chromosome:CEL140:I:10676076:10679091:1 gene:B0511.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10676436-10679022(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol fkb-7
Ensembl B0511.1
Entrez Gene 172963 Entrez gene
SwissProt O61826 EMBL-EBI
WormBase CE26851 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6457 protein folding inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17657 Fk506-binding protein family protein 7 [Caenorhabditis elegans] ref|NP_492792.1| FK506-Binding protein family member (fkb-7) [Caenorhabditis elegans] 1.0E-177
blast CAE67324 Hypothetical protein CBG12786 [Caenorhabditis briggsae] 1.0E-152
blast CAD60686 novel protein similar to human FK506-binding protein (FKBP) [Danio rerio] ref|NP_001004506.1| FK506 binding protein 7 [Danio rerio] 1.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.025
Pfam IPR001179 EMBL-EBI Peptidylprolyl isomerase, FKBP-type 2.2E-19
Sequence
Target Sequence 
>C. ELEGANS:187987_AT
gaactggtccagtcacaattcaacttggaactggaatgattatgccaggacttgataagg
gtctgaaaggaatgtgtgcagaagagcttcgaaaagtccgtgtaccatatcgtatgagca
gaaagagcaagagcaaggtgtggaaaaatataccgaatgatgaaaactggctgattttta
acattgaaatggtcgagatcaagccatacaccccagagattcagtttaaatttttggatt
tgaatgaggatgaacagttgacaaataaagaggttcaagatttccaaaagaaaatgaaaa
aagaatttggaaagacatggaagaatgaggatattgacaatgtcactgctgctggttatt
atatcaaatatttcgatgtgaatggagatggaattgtgacagaagttgaatggctgaaaa
ttatggatcgagatgagaaacttatcaatgataagaaaacaaaagaaaagggacgaaaga
gagatcctggaattggatggattttggattttgataatgacggaattgtttcttataagg
aaaatgatgaagctgctgatcgatttgatgcagggccaacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTGGTCCAGTCACAATTCAACT 374 349 482 Antisense
GGAATGATTATGCCAGGACTTGATA 347 533 514 Antisense
AGGAATGTGTGCAGAAGAGCTTCGA 113 55 549 Antisense
AGAGCTTCGAAAAGTCCGTGTACCA 426 69 564 Antisense
GTCCGTGTACCATATCGTATGAGCA 570 475 577 Antisense
AAACTGGCTGATTTTTAACATTGAA 320 125 645 Antisense
TGGTCGAGATCAAGCCATACACCCC 676 551 671 Antisense
CCATACACCCCAGAGATTCAGTTTA 238 271 685 Antisense
TTGACAATGTCACTGCTGCTGGTTA 669 701 815 Antisense
GTCACTGCTGCTGGTTATTATATCA 508 465 823 Antisense
GATCGATTTGATGCAGGGCCAACAC 452 417 1039 Antisense
Sequence Source Affymetrix Proprietary Database