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[187984_at]

Description F39B2.2 /REP_DB=WormBase Gene ID /WP=CE16008 /GEN=mms-2 /TR=O45495 /GB=CAB07383.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 82      4grp_highest_8_8 > 22      4grp_high_8_8 > 14      6grp_highest_nonorm > 46      6grp_total > 82      4grp_total > 09      6grp_highest_sub > 04_05      6grp_cgc > 86      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4553
1 2 3 4 range
A 2100.7
(-3)
P 		2299.1
(-2.7)
P 		2685.7
(-2.2)
P 		6616.2
(3)
P 		4516
B 2063.2
(-3)
P 		2496.9
(-2.4)
P 		3015.3
(-1.7)
P 		6341.3
(3)
P 		4278
C 2463.8
(-3)
P 		2714.2
(-2.6)
P 		2813.7
(-2.4)
P 		5870.7
(3)
P 		3407
avr 2209.2
(-3) 		2503.4
(-2.6) 		2838.2
(-2.1) 		6276.1
(3) 		4067

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1311
1 2 3 4 5 6 range
A 2631.6
(-1.6)
P 		2339.1
(-3)
P 		3081
(0.7)
P 		3556.4
(3)
P 		3053.4
(0.5)
P 		2529
(-2.1)
P 		1217
B 2245.5
(-3)
P 		2673.5
(-0.9)
P 		2657.2
(-1)
P 		3460
(3)
P 		3288.1
(2.2)
P 		2471.9
(-1.9)
P 		1215
C 3004.2
(1.3)
P 		2475.5
(-3)
P 		2787.7
(-0.5)
P 		2986.6
(1.2)
P 		3213.3
(3)
P 		2926.5
(0.7)
P 		738
avr 2627.1
(-2.1) 		2496
(-3) 		2842
(-0.5) 		3334.3
(3) 		3184.9
(1.9) 		2642.5
(-2) 		838
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 852
1 2 3 4 range
A 764.9
(0.4)
P 		499.1
(-3)
P 		702.1
(-0.4)
P 		968.5
(3)
P 		469
B 658
(-2.7)
P 		616.7
(-3)
P 		698.7
(-2.3)
P 		1351.3
(3)
P 		735
C 815.6
(-2)
P 		780.3
(-3)
P 		980.7
(2.7)
P 		989.9
(3)
P 		210
avr 746.2
(-1.5) 		632
(-3) 		793.8
(-0.9) 		1103.2
(3) 		471

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 851
1 2 3 4 5 6 range
A 485.1
(-3)
P 		831.9
(1.8)
P 		671
(-0.4)
P 		902
(2.7)
P 		921.4
(3)
P 		615.7
(-1.2)
P 		436
B 781.3
(-1.8)
P 		889.9
(-0.9)
P 		645.3
(-3)
P 		916.4
(-0.6)
P 		1335.9
(3)
P 		921.8
(-0.6)
P 		691
C 1113.5
(3)
P 		755.4
(-1.2)
P 		709.5
(-1.7)
P 		600.6
(-3)
P 		1039.8
(2.1)
P 		979.7
(1.4)
P 		513
avr 793.3
(-1.3) 		825.7
(-0.9) 		675.3
(-3) 		806.3
(-1.1) 		1099
(3) 		839.1
(-0.7) 		424
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187984_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2007
Sequence Type Exemplar sequence
Representative Public ID F39B2.2 NCBI
Target Description F39B2.2 /REP_DB=WormBase Gene ID /WP=CE16008 /GEN=mms-2 /TR=O45495 /GB=CAB07383.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061177(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061177 NCBI Caenorhabditis elegans Ubiquitin E2 (conjugating enzyme) variant family member (uev-1) (uev-1) mRNA, complete cds. 11/11 None
SNAP00000018501 ENSEMBL cdna:SNAP chromosome:CEL140:I:14778695:14798915:1 11/11 None
GENEFINDER00000018518 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14797673:14798915:1 11/11 None
F39B2.2 ENSEMBL cdna:known chromosome:CEL140:I:14798360:14799052:1 gene:F39B2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14798380-14798846(+) 99.29 99.29
Public Domain and Genome References
Gene Title
Gene Symbol uev-1
Ensembl F39B2.2
Entrez Gene 173347 Entrez gene
SwissProt O45495 EMBL-EBI
WormBase CE16008 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12818_AT ubiquitin-conjugating enzyme family protein at
ATH1-121501:263949_AT ubiquitin-conjugating enzyme family protein at
CANINE:1604907_AT similar to ubiquitin-conjugating enzyme E2 variant 2 cfa
CANINE_2:CFA.1736.1.S1_AT similar to ubiquitin-conjugating enzyme E2 variant 2 cfa
CANINE_2:CFAAFFX.10870.1.S1_AT similar to ubiquitin-conjugating enzyme E2 variant 2 cfa
CANINE_2:CFAAFFX.10870.1.S1_S_AT similar to ubiquitin-conjugating enzyme E2 variant 2 cfa
CANINE_2:CFAAFFX.17776.1.S1_S_AT similar to ubiquitin-conjugating enzyme E2 variant 2 cfa
CHICKEN:GGA.15795.1.S1_AT ubiquitin-conjugating enzyme E2 variant 2 gga
HG-U133A:209096_AT ubiquitin-conjugating enzyme E2 variant 2 hs
HG-U133_PLUS_2:209096_AT ubiquitin-conjugating enzyme E2 variant 2 hs
HG-FOCUS:209096_AT ubiquitin-conjugating enzyme E2 variant 2 hs
HG-U133A_2:209096_AT ubiquitin-conjugating enzyme E2 variant 2 hs
HUGENEFL:U62136_AT ubiquitin-conjugating enzyme E2 variant 2 hs
U133_X3P:G4775663_3P_AT ubiquitin-conjugating enzyme E2 variant 2 hs
U133_X3P:HS.247848.0.S1_3P_S_AT ubiquitin-conjugating enzyme E2 variant 2 hs
HG-U95AV2:37750_AT ubiquitin-conjugating enzyme E2 variant 2 hs
HU35KSUBA:RC_AA436186_AT Ubiquitin-conjugating enzyme E2 variant 2 hs
HU35KSUBC:RC_AA441910_AT Ubiquitin-conjugating enzyme E2 variant 2 hs
U133_X3P:HS.43569.0.A1_3P_AT Ubiquitin-conjugating enzyme E2 variant 2 hs
U133_X3P:HS.30662.0.A1_3P_AT Ubiquitin-conjugating enzyme E2 variant 2 hs
HG-U133_PLUS_2:228734_AT Ubiquitin-conjugating enzyme E2 variant 2 hs
HG-U133B:228734_AT Ubiquitin-conjugating enzyme E2 variant 2 hs
HG-U133_PLUS_2:230411_AT Ubiquitin-conjugating enzyme E2 variant 2 hs
HG-U133B:230411_AT Ubiquitin-conjugating enzyme E2 variant 2 hs
HG-U95B:52701_AT Ubiquitin-conjugating enzyme E2 variant 2 hs
HG-U95B:53558_AT Ubiquitin-conjugating enzyme E2 variant 2 hs
HG-U95E:83354_R_AT Ubiquitin-conjugating enzyme E2 variant 2 hs
MG-U74AV2:160247_AT ubiquitin-conjugating enzyme E2 variant 2 mm
MOUSE430_2:1417983_A_AT ubiquitin-conjugating enzyme E2 variant 2 mm
MOE430A:1417983_A_AT ubiquitin-conjugating enzyme E2 variant 2 mm
MOUSE430A_2:1417983_A_AT ubiquitin-conjugating enzyme E2 variant 2 mm
MU11KSUBA:C81524_RC_S_AT ubiquitin-conjugating enzyme E2 variant 2 mm
MG-U74AV2:161725_R_AT ubiquitin-conjugating enzyme E2 variant 2 mm
MOE430A:1417984_AT ubiquitin-conjugating enzyme E2 variant 2 mm
MOUSE430A_2:1417984_AT ubiquitin-conjugating enzyme E2 variant 2 mm
MOUSE430_2:1417984_AT ubiquitin-conjugating enzyme E2 variant 2 mm
MOE430B:1429132_AT ubiquitin-conjugating enzyme E2 variant 2 mm
MOUSE430_2:1429132_AT ubiquitin-conjugating enzyme E2 variant 2 mm
MOE430B:1429131_AT ubiquitin-conjugating enzyme E2 variant 2 mm
MOUSE430_2:1429131_AT ubiquitin-conjugating enzyme E2 variant 2 mm
RAE230A:1372143_AT ubiquitin-conjugating enzyme E2 variant 2 rn
RAT230_2:1372143_AT ubiquitin-conjugating enzyme E2 variant 2 rn
RG-U34C:RC_AI178271_AT ubiquitin-conjugating enzyme E2 variant 2 rn
YEAST_2:1777442_AT Protein involved in error-free postreplication DNA repair; forms a heteromeric complex with Ubc13p that has a ubiquitin-conjugating activity; cooperates with chromatin-associated RING finger proteins, Rad18p and Rad5p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6464 protein modification inferred from electronic annotation QuickGO AmiGO
6512 ubiquitin cycle inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4840 ubiquitin conjugating enzyme activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07383 Hypothetical protein F39B2.2 [Caenorhabditis elegans] ref|NP_493578.1| Ubiquitin E2 (conjugating enzyme) variant family member (uev-1) [Caenorhabditis elegans] 6.0E-73
blast CAB07383 Hypothetical protein F39B2.2 [Caenorhabditis elegans] ref|NP_493578.1| Ubiquitin E2 (conjugating enzyme) variant family member (uev-1) [Caenorhabditis elegans] 2.0E-72
blast CAB07383 Hypothetical protein F39B2.2 [Caenorhabditis elegans] ref|NP_493578.1| Ubiquitin E2 (conjugating enzyme) variant family member (uev-1) [Caenorhabditis elegans] 4.0E-72
blast CAE72530 Hypothetical protein CBG19710 [Caenorhabditis briggsae] 2.0E-68
blast CAE72530 Hypothetical protein CBG19710 [Caenorhabditis briggsae] 7.0E-68
blast CAE72530 Hypothetical protein CBG19710 [Caenorhabditis briggsae] 1.0E-67
blast NP_001026189 ubiquitin-conjugating enzyme E2 variant 2 [Gallus gallus] emb|CAH65141.1| hypothetical protein [Gallus gallus] 1.0E-46
blast NP_001026189 ubiquitin-conjugating enzyme E2 variant 2 [Gallus gallus] emb|CAH65141.1| hypothetical protein [Gallus gallus] 6.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR000608 EMBL-EBI Ubiquitin-conjugating enzymes 5.6E-12
Pfam IPR000608 EMBL-EBI Ubiquitin-conjugating enzymes 5.6E-12
Pfam IPR000608 EMBL-EBI Ubiquitin-conjugating enzymes 5.6E-12
Sequence
Target Sequence 
>C. ELEGANS:187984_AT
cacgcaatttccgtctgctggaagaacttgaagaaggacaaaaaggcaagggagatggaa
acatttcgtggggtttggaggatgacagcgatatgactctcaccagatggactgcttcca
tcattggtccaccgagaactccatacgaatcgcgaatctacaatctgcaaatccagtgcg
gcgggaattatccgcgagagccaccaaccgttcgtttcaccaccaaagttcacatggtgg
gagtcaatcagagcaatggagtgattgataagcgaaatttgacaacacttcgcaactgga
gcaatagttacatgatcaagaccgtgctcgaggatatccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGCAATTTCCGTCTGCTGGAAGA 409 199 26 Antisense
GGATGACAGCGATATGACTCTCACC 65 515 105 Antisense
TGACTCTCACCAGATGGACTGCTTC 292 571 119 Antisense
TGGACTGCTTCCATCATTGGTCCAC 47 549 133 Antisense
GTCCACCGAGAACTCCATACGAATC 79 477 152 Antisense
GAATCGCGAATCTACAATCTGCAAA 568 329 172 Antisense
AATCTGCAAATCCAGTGCGGCGGGA 4 169 187 Antisense
GCGGCGGGAATTATCCGCGAGAGCC 98 293 203 Antisense
CGTTTCACCACCAAAGTTCACATGG 25 247 238 Antisense
GACAACACTTCGCAACTGGAGCAAT 78 365 306 Antisense
CAAGACCGTGCTCGAGGATATCCGC 246 185 342 Antisense
Sequence Source Affymetrix Proprietary Database