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[187982_at]

Description F26D2.2 /REP_DB=WormBase Gene ID /WP=CE15905 /GEN=syp-1 /TR=O45358 /GB=CAB04186.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 42      6grp_cgc > 58      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 90.2
(0.6)
A 		119.2
(3)
A 		47.8
(-3)
A 		72.8
(-0.9)
P 		71
B 50.6
(0.1)
A 		29.7
(-1.6)
A 		88
(3)
A 		11.7
(-3)
A 		76
C 9.9
(-3)
A 		65.1
(2.2)
A 		39.4
(-0.2)
A 		73.1
(3)
P 		63
avr 50.2
(-3) 		71.3
(3) 		58.4
(-0.7) 		52.5
(-2.3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1054
1 2 3 4 5 6 range
A 39.7
(-3)
A 		77.1
(-2.7)
A 		60.1
(-2.8)
A 		139.5
(-2.1)
P 		412.1
(0.2)
P 		739.8
(3)
P 		700
B 12
(-3)
A 		85.8
(-2.6)
A 		15.2
(-3)
A 		202.5
(-1.9)
P 		451.9
(-0.5)
P 		1065.5
(3)
P 		1054
C 59.9
(-3)
A 		77
(-2.9)
A 		70.1
(-2.9)
A 		235
(-1.7)
P 		410.7
(-0.5)
P 		890.4
(3)
P 		831
avr 37.2
(-3) 		80
(-2.7) 		48.5
(-2.9) 		192.3
(-1.9) 		424.9
(-0.3) 		898.6
(3) 		861
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 32.8
(3)
A 		25.9
(1.1)
A 		12.5
(-2.5)
A 		10.7
(-3)
P 		22
B 16.1
(1.6)
A 		7.3
(-1.4)
A 		20.4
(3)
A 		2.5
(-3)
A 		18
C 3.3
(-3)
A 		18.7
(3)
A 		13.7
(1.1)
A 		12.3
(0.5)
P 		15
avr 17.4
(3) 		17.3
(2.9) 		15.5
(1.7) 		8.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 394
1 2 3 4 5 6 range
A 7.3
(-3)
A 		27.4
(-2.3)
A 		13.1
(-2.8)
A 		35.4
(-2)
P 		124.3
(1.1)
P 		180.1
(3)
P 		173
B 4.2
(-3)
A 		28.6
(-2.6)
A 		3.7
(-3)
A 		53.6
(-2.2)
P 		183.6
(-0.3)
P 		397.3
(3)
P 		394
C 22.2
(-2.9)
A 		23.5
(-2.9)
A 		17.8
(-3)
A 		47.3
(-2.4)
P 		132.9
(-0.5)
P 		298.1
(3)
P 		280
avr 11.2
(-3) 		26.5
(-2.7) 		11.5
(-3) 		45.4
(-2.3) 		146.9
(-0.1) 		291.8
(3) 		281
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187982_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13477
Sequence Type Exemplar sequence
Representative Public ID F26D2.2 NCBI
Target Description F26D2.2 /REP_DB=WormBase Gene ID /WP=CE15905 /GEN=syp-1 /TR=O45358 /GB=CAB04186.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074744(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074744 NCBI Caenorhabditis elegans SYnaPsis in meiosis abnormal family member (syp-1) (syp-1) mRNA, complete cds. 11/11 None
SNAP00000037732 ENSEMBL cdna:SNAP chromosome:CEL140:V:16406369:16410190:1 11/11 None
GENEFINDER00000037749 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16408346:16410190:1 11/11 None
F26D2.2 ENSEMBL cdna:known chromosome:CEL140:V:16408346:16410270:1 gene:F26D2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16404809-16410190(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol syp-1
Ensembl F26D2.2
Entrez Gene 180102 Entrez gene
SwissProt Q8MUP4 EMBL-EBI
WormBase CE33925 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04186 Hypothetical protein F26D2.2 [Caenorhabditis elegans] ref|NP_507145.2| SYnaPsis in meiosis abnormal family member (syp-1) [Caenorhabditis elegans] gb|AAM55225.1| synaptonemal complex protein SYP-1 [Caenorhabditis elegans] 0.0
blast T20815 hypothetical protein F26D2.2 - Caenorhabditis elegans 0.0
blast CAE59133 Hypothetical protein CBG02434 [Caenorhabditis briggsae] 3.0E-90
Sequence
Target Sequence 
>C. ELEGANS:187982_AT
ggagcagctccaatcttcaaaaacggagagtgatcttgaagaagagatctctgctatgca
gttggaaatcaatgactatgataagcaaatcaaggacgccgccaaggaacacgagaagtt
gttcaatcaaattaaagaacaacgtgctgcaaacggcgatcaatttaacgacaccatcga
tatcgtggaatccgactattcagatcgagtagttccgccgcagccaagtgtagaagttac
tccagtacaccgacaagtgtctcatgatgtattctcggcgccattgatgacgagcacacc
acttaccgcagctaccagaccgttgaaacgaactcgtgcggccgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCAGCTCCAATCTTCAAAAACG 92 521 1977 Antisense
AATCAAGGACGCCGCCAAGGAACAC 506 167 2064 Antisense
GAACAACGTGCTGCAAACGGCGATC 623 351 2113 Antisense
ACGGCGATCAATTTAACGACACCAT 443 95 2129 Antisense
TATTCAGATCGAGTAGTTCCGCCGC 577 661 2173 Antisense
TTCCGCCGCAGCCAAGTGTAGAAGT 115 697 2189 Antisense
GAAGTTACTCCAGTACACCGACAAG 519 337 2209 Antisense
TGTCTCATGATGTATTCTCGGCGCC 59 559 2234 Antisense
CATTGATGACGAGCACACCACTTAC 173 217 2258 Antisense
GCAGCTACCAGACCGTTGAAACGAA 579 311 2284 Antisense
TTGAAACGAACTCGTGCGGCCGATC 361 705 2299 Antisense
Sequence Source Affymetrix Proprietary Database