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[187981_at]

Description ZK622.2 /REP_DB=WormBase Gene ID /WP=CE28382 /GEN=gur-5 /TR=Q23553 /GB=AAK71421.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 36      6grp_total > 14      4grp_total > 34      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 160.8
(-3)
P 		223.8
(3)
P 		222.1
(2.8)
P 		207.4
(1.4)
P 		63
B 212.4
(1.6)
P 		207.5
(1)
P 		168.6
(-3)
P 		226.3
(3)
A 		58
C 128.9
(-3)
A 		181.3
(3)
A 		137
(-2.1)
P 		155.2
(0)
P 		52
avr 167.4
(-3) 		204.2
(3) 		175.9
(-1.6) 		196.3
(1.7) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 258
(3)
P 		207.2
(0.7)
A 		149
(-1.8)
A 		159.4
(-1.4)
A 		137.8
(-2.3)
A 		122.6
(-3)
A 		135
B 164.9
(3)
P 		143.7
(1.3)
A 		120.8
(-0.6)
A 		148.1
(1.6)
A 		125.4
(-0.2)
P 		91.7
(-3)
A 		73
C 188.7
(2.7)
P 		193.4
(3)
P 		144
(0.1)
A 		163.8
(1.2)
P 		92
(-3)
A 		106.7
(-2.1)
A 		101
avr 203.9
(3) 		181.4
(1.6) 		137.9
(-1.1) 		157.1
(0.1) 		118.4
(-2.3) 		107
(-3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 58.5
(3)
P 		48.6
(0.9)
P 		58
(2.9)
P 		30.4
(-3)
P 		28
B 67.7
(3)
P 		51.2
(-0.5)
P 		39.1
(-3)
P 		48.2
(-1.1)
A 		29
C 42.7
(0.8)
A 		52.1
(3)
A 		47.7
(2)
P 		26.2
(-3)
P 		26
avr 56.3
(3) 		50.6
(1.4) 		48.3
(0.8) 		34.9
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 47.6
(-0.6)
P 		73.7
(3)
A 		32.5
(-2.6)
A 		40.4
(-1.6)
A 		41.6
(-1.4)
A 		29.9
(-3)
A 		44
B 57.4
(3)
P 		47.8
(1)
A 		29.3
(-3)
A 		39.2
(-0.9)
A 		51
(1.6)
P 		34.2
(-2)
A 		28
C 69.9
(3)
P 		59
(1.4)
P 		36.6
(-2)
A 		32.9
(-2.5)
P 		29.8
(-3)
A 		35.7
(-2.1)
A 		40
avr 58.3
(2.6) 		60.2
(3) 		32.8
(-3) 		37.5
(-2) 		40.8
(-1.2) 		33.3
(-2.9) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187981_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4104
Sequence Type Exemplar sequence
Representative Public ID ZK622.2 NCBI
Target Description ZK622.2 /REP_DB=WormBase Gene ID /WP=CE28382 /GEN=gur-5 /TR=Q23553 /GB=AAK71421.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062592
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062592 NCBI Caenorhabditis elegans ZK622.4 (ZK622.4) mRNA, complete cds. None
SNAP00000008533 ENSEMBL cdna:SNAP chromosome:CEL140:II:5289413:5290151:1 None
SNAP00000008535 ENSEMBL cdna:SNAP chromosome:CEL140:II:5292679:5293113:1 None
ZK622.4 ENSEMBL cdna:known chromosome:CEL140:II:5289413:5293274:1 gene:ZK622.4 None
GENEFINDER00000008555 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5289413:5290151:1 None
GENEFINDER00000008556 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5292679:5293113:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5285309-5293111(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK622.4
Entrez Gene 191367 Entrez gene
SwissProt Q95PW6 EMBL-EBI
WormBase CE38578 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27937 hypothetical protein ZK622.2 - Caenorhabditis elegans 1.0E-159
blast CAE59077 Hypothetical protein CBG02365 [Caenorhabditis briggsae] 1.0E-149
blast T27937 hypothetical protein ZK622.2 - Caenorhabditis elegans 5.0E-94
blast T27937 hypothetical protein ZK622.2 - Caenorhabditis elegans 5.0E-91
blast CAE59077 Hypothetical protein CBG02365 [Caenorhabditis briggsae] 4.0E-87
blast CAE59077 Hypothetical protein CBG02365 [Caenorhabditis briggsae] 3.0E-84
blast CAE59077 Hypothetical protein CBG02365 [Caenorhabditis briggsae] 5.0E-60
blast AAK71422 Hypothetical protein ZK622.4 [Caenorhabditis elegans] ref|NP_494993.2| ZK622.4 [Caenorhabditis elegans] 5.0E-60
blast T27937 hypothetical protein ZK622.2 - Caenorhabditis elegans 5.0E-60
Sequence
Target Sequence 
>C. ELEGANS:187981_AT
gacgattttattacttcaaccactcagcaaactttctggagcagacgtatcgattgtgaa
agaaaagatgtctactgtgatgatcgacacgacgagttcatgggatgcgagtcttcaccc
ctcttatcactattttttacccattcaccttcacgtgtctgtaccagatccctcgacgcg
cgggcggcacgcactctacaagttgtgctctccaaatgtgtgctcttttcctctttcatt
ctgctgctgcttccaaccaaaaagaattctctgtttgtcctgactcccgtgtcagggaga
atcatcatgaaggagccatgcttcagatgcaaacgacccacttatttcaatgataagatg
ggacccctaaaagatggatccatgtttcataaaggatgttttaaatgttggatttgcgga
acccggttgtcactgaaaacttatcacaataatagaaatgataatactgatctcgaggta
tactgtgcgggtcacgtaccaactccaggaccacatgatccaattccacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGATTTTATTACTTCAACCACTC 323 379 1696 Antisense
TCATGGGATGCGAGTCTTCACCCCT 276 623 1793 Antisense
TATCACTATTTTTTACCCATTCACC 95 661 1820 Antisense
ACCTTCACGTGTCTGTACCAGATCC 607 87 1842 Antisense
GCGGCACGCACTCTACAAGTTGTGC 643 293 1879 Antisense
AAGTTGTGCTCTCCAAATGTGTGCT 33 157 1895 Antisense
AAAGAATTCTCTGTTTGTCCTGACT 40 123 1956 Antisense
ATGCAAACGACCCACTTATTTCAAT 637 43 2022 Antisense
ATTTGCGGAACCCGGTTGTCACTGA 644 13 2107 Antisense
GATCTCGAGGTATACTGTGCGGGTC 235 419 2164 Antisense
GGACCACATGATCCAATTCCACATC 389 521 2203 Antisense
Sequence Source Affymetrix Proprietary Database