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[187979_at] Diphenol oxidase A2

Description C30C11.2 /REP_DB=WormBase Gene ID /WP=CE00101 /GEN=rpn-3 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Diphenol oxidase A2
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 73      4grp_highest_8_8 > 11      4grp_high_8_8 > 39      6grp_highest_nonorm > 47      6grp_total > 73      4grp_total > 40      6grp_highest_sub > 04      6grp_cgc > 76      6grp_high1_sub > 03_04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1467
1 2 3 4 range
A 3274.4
(-3)
P 		4263.5
(1.9)
P 		4488.3
(3)
P 		3821.8
(-0.3)
P 		1214
B 3196.8
(-3)
P 		3821.3
(-0.4)
P 		4663.4
(3)
P 		3896.1
(-0.1)
P 		1467
C 3297.2
(-3)
P 		3360.7
(-2.7)
P 		4448.9
(3)
P 		3882.3
(0)
P 		1152
avr 3256.1
(-3) 		3815.2
(-0.4) 		4533.5
(3) 		3866.7
(-0.1) 		1277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1248
1 2 3 4 5 6 range
A 2721.5
(-3)
P 		3496.6
(0.8)
P 		2809.6
(-2.6)
P 		3948.5
(3)
P 		3312.7
(-0.1)
P 		3942.6
(3)
P 		1227
B 2753
(-3)
P 		3281.7
(0.2)
P 		3337.3
(0.5)
P 		3749.8
(3)
P 		3207.2
(-0.3)
P 		3344.8
(0.6)
P 		997
C 3219.3
(-1.4)
P 		3166.3
(-1.7)
P 		3969
(3)
P 		3315.4
(-0.8)
P 		3401.1
(-0.3)
P 		2946.9
(-3)
P 		1022
avr 2897.9
(-3) 		3314.9
(0.2) 		3372
(0.7) 		3671.2
(3) 		3307
(0.2) 		3411.4
(1) 		773
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 991
1 2 3 4 range
A 1192.2
(3)
P 		925.5
(0.5)
P 		1173.3
(2.8)
P 		559.4
(-3)
P 		633
B 1019.4
(1.5)
P 		943.8
(-0.3)
P 		1080.6
(3)
P 		830.3
(-3)
P 		250
C 1091.5
(-0.1)
P 		966.2
(-0.9)
P 		1550.6
(3)
P 		654.6
(-3)
P 		896
avr 1101
(1.3) 		945.2
(-0.3) 		1268.2
(3) 		681.4
(-3) 		587

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 801
1 2 3 4 5 6 range
A 501.7
(-3)
P 		1243.6
(3)
P 		611.9
(-2.1)
P 		1001.4
(1)
P 		999.6
(1)
P 		959.9
(0.7)
P 		742
B 957.9
(-1.2)
P 		1092.3
(0.4)
P 		810.4
(-3)
P 		993.2
(-0.8)
P 		1303
(3)
P 		1247.3
(2.3)
P 		493
C 1193.2
(3)
P 		966.1
(0.4)
P 		1010.2
(0.9)
P 		666.7
(-3)
P 		1100.6
(1.9)
P 		986.5
(0.6)
P 		527
avr 884.3
(-1.6) 		1100.7
(2.4) 		810.8
(-3) 		887.1
(-1.6) 		1134.4
(3) 		1064.6
(1.7) 		324
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187979_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6478
Sequence Type Exemplar sequence
Representative Public ID C30C11.2 NCBI
Target Description C30C11.2 /REP_DB=WormBase Gene ID /WP=CE00101 /GEN=rpn-3 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Diphenol oxidase A2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066468(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066468 NCBI Caenorhabditis elegans proteasome Regulatory Particle, Non-ATPase-like family member (rpn-3) (rpn-3) mRNA, complete cds. 11/11 None
SNAP00000009804 ENSEMBL cdna:SNAP chromosome:CEL140:III:8447269:8448921:1 11/11 None
GENEFINDER00000009808 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8447269:8448921:1 11/11 None
C30C11.2.2 ENSEMBL cdna:known chromosome:CEL140:III:8447263:8449079:1 gene:C30C11.2 11/11 None
C30C11.2.1 ENSEMBL cdna:known chromosome:CEL140:III:8447265:8449224:1 gene:C30C11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8447264-8448917(+) 100.0 100.0
Public Domain and Genome References
Gene Title Diphenol oxidase A2
Gene Symbol rpn-3
Ensembl C30C11.2
Entrez Gene 176196 Entrez gene
SwissProt Q04908 EMBL-EBI
WormBase CE00101 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261227_AT 26S proteasome regulatory subunit S3, putative (RPN3) at
CANINE:1606166_AT similar to 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome regulatory subunit S3) (Proteasome subunit p58) cfa
CANINE_2:CFA.21342.1.S1_S_AT similar to 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome regulatory subunit S3) (Proteasome subunit p58) cfa
CANINE_2:CFA.3239.1.S1_AT similar to 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome regulatory subunit S3) (Proteasome subunit p58) cfa
CANINE_2:CFAAFFX.24945.1.S1_AT similar to 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome regulatory subunit S3) (Proteasome subunit p58) cfa
CANINE_2:CFAAFFX.24945.1.S1_S_AT similar to 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome regulatory subunit S3) (Proteasome subunit p58) cfa
DROSOPHILA_2:1628269_AT Diphenol oxidase A2 dm
DROSGENOME1:143129_AT Diphenol oxidase A2 dm
CHICKEN:GGA.4645.3.S1_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 gga
HG-U133_PLUS_2:201388_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 hs
HG-U133A_2:201388_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 hs
HG-U133A:201388_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 hs
HG-FOCUS:201388_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 hs
HU35KSUBA:RC_AA465243_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 hs
HU35KSUBA:R20358_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 hs
U133_X3P:G4506228_3P_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 hs
HG-U95AV2:39155_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 hs
HG-U95D:83459_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 hs
HU35KSUBB:RC_T66906_F_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 hs
HU35KSUBB:RC_T66906_R_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 hs
MU11KSUBA:M25149_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 mm
MU11KSUBB:MSA.439.0_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 mm
MG-U74AV2:92769_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 mm
MOE430A:1448479_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 mm
MOUSE430A_2:1448479_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 mm
MOUSE430_2:1448479_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 mm
MG-U74AV2:161674_I_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 (Psmd3), mRNA mm
RG-U34B:RC_AI007986_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 (predicted) rn
RAE230A:1388466_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 (predicted) rn
RAT230_2:1388466_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 (predicted) rn
YEAST_2:1779691_AT Essential, non-ATPase regulatory subunit of the 26S proteasome lid, similar to the p58 subunit of the human 26S proteasome; temperature-sensitive alleles cause metaphase arrest, suggesting a role for the proteasome in cell cycle control Sc
Protein Similarities
Method ID Description E-Value
blast AAA27966 Proteasome regulatory particle, non-atpase-like protein 3 [Caenorhabditis elegans] ref|NP_498869.1| proteasome Regulatory Particle, Non-ATPase-like family member (rpn-3) [Caenorhabditis elegans] sp|Q04908|PSD3_CAEEL 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome regulatory subunit rpn-3) 0.0
blast CAE71252 Hypothetical protein CBG18132 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000717 EMBL-EBI Proteasome component region PCI 2.1E-21
Sequence
Target Sequence 
>C. ELEGANS:187979_AT
tgggttgttgtcattggtcttctacaaggagagattcctgatcgaagtgtgttccgtcaa
ccaatttatcgcaaatgtcttgctcactacctggatctcagtcgaggcgttcgcgatgga
gatgttgctcgttttaatcataatttggagcaattcaaaacacagtttgaagctgatgat
actctcacattgattgttcgtctgcgtcaaaacgtcatcaagactgcaatcaagcaaatt
tctttggcgtattcccgaatttatatcaaggatattgccaagaagttgtatattactaac
gagacagagactgaatacattgtggcgaaggctattgccgatggagcaatcgatgctgtt
atcacttctgatgttcgtgatggacctcggtacatgcaaagttcagaaacagctgatatt
tatcgtacttcggagccacaagctcacttcgatactcgtatccgttactgcctcgaattg
cacaatcaagctgtcaaagctctcagatatccaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGTTGTTGTCATTGGTCTTCTAC 664 553 907 Antisense
GTGTTCCGTCAACCAATTTATCGCA 118 485 955 Antisense
ATCGCAAATGTCTTGCTCACTACCT 302 37 974 Antisense
ACTACCTGGATCTCAGTCGAGGCGT 598 101 992 Antisense
GAGGCGTTCGCGATGGAGATGTTGC 594 405 1010 Antisense
CTCACATTGATTGTTCGTCTGCGTC 637 227 1090 Antisense
GCAATCGATGCTGTTATCACTTCTG 55 323 1252 Antisense
TGATGTTCGTGATGGACCTCGGTAC 101 567 1275 Antisense
GAGCCACAAGCTCACTTCGATACTC 37 385 1339 Antisense
TATCCGTTACTGCCTCGAATTGCAC 518 657 1365 Antisense
GTCAAAGCTCTCAGATATCCACCAA 266 465 1399 Antisense
Sequence Source Affymetrix Proprietary Database