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[187978_at]

Description F46H5.6 /REP_DB=WormBase Gene ID /WP=CE10614 /GEN=grd-7 /TR=P90878 /GB=AAB37027.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 19      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 6.4
(-2.9)
A 		19.1
(-2.2)
A 		4
(-3)
A 		117.5
(3)
M 		114
B 16.2
(-2.1)
A 		55.5
(3)
A 		9.2
(-3)
A 		51.8
(2.5)
A 		46
C 56.1
(-0.8)
A 		38
(-2.1)
A 		26.3
(-3)
A 		107.6
(3)
P 		81
avr 26.2
(-2) 		37.5
(-1.2) 		13.2
(-3) 		92.3
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1061
1 2 3 4 5 6 range
A 49.7
(-2.7)
A 		8.8
(-3)
A 		67.1
(-2.6)
A 		510.3
(0.5)
P 		875
(3)
P 		203.1
(-1.7)
P 		866
B 4.8
(-3)
A 		31.9
(-2.8)
A 		54
(-2.6)
A 		574.5
(1.1)
P 		842.8
(3)
P 		136.9
(-2.1)
P 		838
C 36
(-3)
A 		42.1
(-3)
P 		56.3
(-2.9)
A 		458.2
(-0.5)
P 		1066.2
(3)
P 		132.5
(-2.4)
P 		1030
avr 30.2
(-3) 		27.6
(-3) 		59.1
(-2.8) 		514.3
(0.2) 		928
(3) 		157.5
(-2.1) 		900
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.3
(-2.5)
A 		4.1
(-1.9)
A 		1
(-3)
A 		17.2
(3)
M 		16
B 5.2
(-1.4)
A 		13.7
(3)
A 		2.1
(-3)
A 		11
(1.6)
A 		12
C 18.6
(3)
A 		10.9
(-1.9)
A 		9.2
(-3)
A 		18.1
(2.7)
P 		9
avr 8.7
(-0.6) 		9.6
(-0.1) 		4.1
(-3) 		15.4
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 9.2
(-2.9)
A 		3.1
(-3)
A 		14.6
(-2.7)
A 		129.4
(-0.1)
P 		264
(3)
P 		49.4
(-1.9)
P 		261
B 1.7
(-3)
A 		10.6
(-2.8)
A 		13.1
(-2.8)
A 		152.2
(-0.3)
P 		342.4
(3)
P 		51.1
(-2.1)
P 		341
C 13.3
(-3)
A 		12.8
(-3)
P 		14.3
(-3)
A 		92.1
(-1.6)
P 		345
(3)
P 		44.3
(-2.4)
P 		332
avr 8.1
(-3) 		8.8
(-3) 		14
(-2.9) 		124.6
(-0.7) 		317.1
(3) 		48.3
(-2.2) 		309
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187978_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16044
Sequence Type Exemplar sequence
Representative Public ID F46H5.6 NCBI
Target Description F46H5.6 /REP_DB=WormBase Gene ID /WP=CE10614 /GEN=grd-7 /TR=P90878 /GB=AAB37027.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076823 NCBI Caenorhabditis elegans GRounDhog (hedgehog-like family) family member (grd-7) (grd-7) mRNA, complete cds. 11/11 None
F46H5.6 ENSEMBL cdna:known chromosome:CEL140:X:7267935:7271004:-1 gene:F46H5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005034 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7267933-7269424(-) 94.08 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grd-7
Ensembl F46H5.6
Entrez Gene 191661 Entrez gene
WormBase CE37648 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7154 cell communication inferred from sequence similarity QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from sequence similarity QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5199 structural constituent of cell wall inferred from electronic annotation QuickGO AmiGO
5102 receptor binding inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_509224 GRounDhog (hedgehog-like family) family member (grd-7) [Caenorhabditis elegans] 1.0E-167
blast CAE65865 Hypothetical protein CBG11008 [Caenorhabditis briggsae] 1.0E-155
blast AAZ91345 Groundhog (hedgehog-like family) protein 7 [Caenorhabditis elegans] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 2.0E-21
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 3.5E-11
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 2.1E-29
Sequence
Target Sequence 
>C. ELEGANS:187978_AT
tgcaggacccagaacatatcacgaggagcctcagccatatccagcgaaattcgaatacgt
tgactacccagcacctactactcgcagaccttatccgtatccaagtttcgaagttttgcc
acatcacgaagaatatgagccacgatcaactcgtcgaccaacaacgactgaagaaccaac
aacaacgtctcgtaaaccacgtcctggatggaaaggagacacggagtataactatccaga
aagaaaccttcctcttaaaggatgtttttataacaatcatggttatgcatgctgtaacct
taagttgcaaaacaaaatggaagagttggcagatgaactgttgaacaatggtaccttcca
tagatgcaacgttcaaaaattggcgaacgaccttcaggataaagtggaatcagcattcaa
agaagatttcgagactgttgttggattatcagatttcgcggagcgtattcacttccgtga
acactacgtttgcaaaattgaagtgaacggaagatatatgctcgcatgggctactcctga
cgatattgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAGGACCCAGAACATATCACGAG 55 579 654 Antisense
GCCTCAGCCATATCCAGCGAAATTC 95 283 681 Antisense
TTCGAATACGTTGACTACCCAGCAC 475 695 703 Antisense
GCAGACCTTATCCGTATCCAAGTTT 479 311 737 Antisense
GAAGTTTTGCCACATCACGAAGAAT 258 337 763 Antisense
TATGAGCCACGATCAACTCGTCGAC 396 655 787 Antisense
TCTCGTAAACCACGTCCTGGATGGA 252 595 841 Antisense
GGTACCTTCCATAGATGCAACGTTC 297 505 1003 Antisense
AAATTGGCGAACGACCTTCAGGATA 374 113 1030 Antisense
TCGCGGAGCGTATTCACTTCCGTGA 680 597 1109 Antisense
CATGGGCTACTCCTGACGATATTGG 468 209 1178 Antisense
Sequence Source Affymetrix Proprietary Database