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[187976_at] Globin

Description C06H2.5 /REP_DB=WormBase Gene ID /WP=CE05237 /TR=Q17767 /GB=CAA99771.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Globin
Cluster 6grp_total > 27      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 298
(0.1)
P 		155
(-3)
A 		159.6
(-2.9)
A 		428.8
(3)
P 		274
B 310.9
(1.5)
P 		221.6
(-0.6)
A 		116.2
(-3)
A 		374.6
(3)
P 		258
C 384
(3)
P 		189
(-1.5)
A 		124.7
(-3)
A 		284.6
(0.7)
P 		259
avr 331
(2.2) 		188.5
(-1.6) 		133.5
(-3) 		362.7
(3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 216.3
(2.5)
A 		225.6
(3)
P 		117.6
(-3)
P 		167.8
(-0.2)
A 		137.8
(-1.9)
A 		169.8
(-0.1)
P 		108
B 247.1
(3)
P 		206.5
(0.9)
P 		156.1
(-1.8)
P 		133.3
(-3)
P 		132.6
(-3)
M 		217.6
(1.5)
P 		115
C 299.6
(3)
P 		212.6
(-0.3)
A 		175.5
(-1.7)
A 		156.9
(-2.4)
M 		141.4
(-3)
A 		161.3
(-2.2)
P 		158
avr 254.3
(3) 		214.9
(1) 		149.7
(-2.4) 		152.7
(-2.2) 		137.3
(-3) 		182.9
(-0.7) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 108.5
(3)
P 		33.6
(-3)
A 		41.7
(-2.4)
A 		62.8
(-0.7)
P 		75
B 99.1
(3)
P 		54.7
(-0.7)
A 		26.9
(-3)
A 		79.8
(1.4)
P 		72
C 127.1
(3)
P 		54.3
(-2.2)
A 		43.5
(-3)
A 		48
(-2.7)
P 		84
avr 111.6
(3) 		47.5
(-2.2) 		37.4
(-3) 		63.5
(-0.9) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 39.9
(-1.4)
A 		80.2
(3)
P 		25.6
(-3)
P 		42.6
(-1.1)
A 		41.6
(-1.2)
A 		41.4
(-1.3)
P 		55
B 86
(3)
P 		68.7
(1)
P 		37.9
(-2.7)
P 		35.3
(-3)
P 		53.9
(-0.8)
M 		81.1
(2.4)
P 		51
C 111
(3)
P 		64.9
(-0.5)
A 		44.7
(-2)
A 		31.6
(-3)
M 		45.8
(-1.9)
A 		54
(-1.3)
P 		79
avr 79
(3) 		71.3
(1.9) 		36.1
(-3) 		36.5
(-2.9) 		47.1
(-1.5) 		58.8
(0.2) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187976_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13228
Sequence Type Exemplar sequence
Representative Public ID C06H2.5 NCBI
Target Description C06H2.5 /REP_DB=WormBase Gene ID /WP=CE05237 /TR=Q17767 /GB=CAA99771.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Globin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073431(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073431 NCBI Caenorhabditis elegans C06H2.5 (Globin) mRNA, complete cds. 11/11 None
SNAP00000033419 ENSEMBL cdna:SNAP chromosome:CEL140:V:11141542:11142500:1 11/11 None
GENEFINDER00000033426 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11137197:11143114:1 11/11 None
C06H2.5 ENSEMBL cdna:known chromosome:CEL140:V:11141542:11142500:1 gene:C06H2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11141541-11142500(+) 100.0 100.0
Public Domain and Genome References
Gene Title Globin
Ensembl C06H2.5
Entrez Gene 182348 Entrez gene
SwissProt Q17767 EMBL-EBI
WormBase CE05237 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15671 oxygen transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99771 Hypothetical protein C06H2.5 [Caenorhabditis elegans] ref|NP_505832.1| C06H2.5 [Caenorhabditis elegans] 1.0E-119
blast CAA99771 Hypothetical protein C06H2.5 [Caenorhabditis elegans] ref|NP_505832.1| C06H2.5 [Caenorhabditis elegans] 1.0E-116
blast CAE75175 Hypothetical protein CBG23115 [Caenorhabditis briggsae] 1.0E-107
blast CAE75175 Hypothetical protein CBG23115 [Caenorhabditis briggsae] 1.0E-106
blast CAE67526 Hypothetical protein CBG13047 [Caenorhabditis briggsae] 7.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR000971 EMBL-EBI Globin 3.0E-16
Pfam IPR000971 EMBL-EBI Globin 3.0E-16
Sequence
Target Sequence 
>C. ELEGANS:187976_AT
tgggcaataacgttccatctcgaagaatgagtcgagcaactgttcatttagagaacagta
atggggcagataatatgtcatttgtggatgcaattcatttatctccacaccaagtgcagc
tgttgacatccacgtggccacgtatcaagacacaaagcagtctgttcactcaagtgttca
aagtgttaatgcaacgttccccagtttgtcgagaaatgttccagaagatgtcaatcgtcg
gtggatttagtagcaattcagtgtgtgatctcaattcgcatacgaaattgctctgcgagc
ttcttgattccttaatgacagacctacaccaaccagccaagattgttctggcaaagtgtc
aagatgttggcgcagctcatgtgaatatgaatgaaaagtgttgtggagtagtatttgatc
aattgggtgaagcattcacagagctcatcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGCAATAACGTTCCATCTCGAAG 385 551 14 Antisense
ATGCAATTCATTTATCTCCACACCA 695 43 101 Antisense
AAGTGCAGCTGTTGACATCCACGTG 635 157 125 Antisense
GACATCCACGTGGCCACGTATCAAG 642 369 138 Antisense
AAAGCAGTCTGTTCACTCAAGTGTT 610 123 167 Antisense
ACGTTCCCCAGTTTGTCGAGAAATG 557 93 207 Antisense
GTGTGTGATCTCAATTCGCATACGA 639 487 274 Antisense
CTGCGAGCTTCTTGATTCCTTAATG 687 235 306 Antisense
TTAATGACAGACCTACACCAACCAG 182 685 325 Antisense
GATGTTGGCGCAGCTCATGTGAATA 143 411 376 Antisense
GAAGCATTCACAGAGCTCATCACAA 567 341 442 Antisense
Sequence Source Affymetrix Proprietary Database