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[187975_s_at]

Description C05C8.4 /REP_DB=WormBase Gene ID /WP=CE07922 /GEN=gei-6 /TR=O16310 /GB=AAB65371.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 31      6grp_cgc > 28      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 682.2
(3)
P 		426.4
(-3)
A 		494.1
(-1.4)
M 		494.4
(-1.4)
A 		256
B 615
(3)
P 		459.5
(-3)
A 		483.1
(-2.1)
A 		595.6
(2.3)
P 		156
C 625.1
(3)
P 		451.3
(-3)
A 		476.9
(-2.1)
A 		566.8
(1)
P 		174
avr 640.8
(3) 		445.7
(-3) 		484.7
(-1.8) 		552.3
(0.3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 471.8
(-0.5)
A 		523.6
(0.9)
M 		378.9
(-3)
A 		410.2
(-2.2)
A 		487.9
(-0.1)
A 		600.9
(3)
P 		222
B 560.6
(0.6)
M 		552.6
(0.4)
A 		473.6
(-2)
A 		564.4
(0.7)
A 		442
(-3)
A 		639.3
(3)
P 		197
C 450.7
(-3)
P 		538
(0.7)
M 		520.9
(-0)
A 		469.3
(-2.2)
A 		473.6
(-2)
P 		592.7
(3)
P 		142
avr 494.4
(-1.6) 		538.1
(0.1) 		457.8
(-3) 		481.3
(-2.1) 		467.8
(-2.6) 		611
(3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 248.4
(3)
P 		92.6
(-2.3)
A 		129.2
(-1.1)
M 		72.4
(-3)
A 		176
B 196.1
(3)
P 		113.5
(-2.9)
A 		111.9
(-3)
A 		126.9
(-1.9)
P 		84
C 206.9
(3)
P 		129.7
(-1.2)
A 		166.2
(0.8)
A 		95.6
(-3)
P 		111
avr 217.1
(3) 		111.9
(-2.3) 		135.8
(-1.1) 		98.3
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 87
(-2.7)
A 		186.2
(3)
M 		82.5
(-3)
A 		104
(-1.8)
A 		147.2
(0.7)
A 		146.3
(0.7)
P 		104
B 195
(0.9)
M 		183.9
(0.4)
A 		115
(-3)
A 		149.5
(-1.3)
A 		179.6
(0.1)
A 		238.4
(3)
P 		123
C 167.1
(1.2)
P 		164.1
(1)
M 		132.6
(-0.8)
A 		94.4
(-3)
A 		153.3
(0.4)
P 		198.4
(3)
P 		104
avr 149.7
(-0.2) 		178.1
(1.8) 		110
(-3) 		116
(-2.6) 		160
(0.6) 		194.4
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187975_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11301
Sequence Type Exemplar sequence
Representative Public ID C05C8.4 NCBI
Target Description C05C8.4 /REP_DB=WormBase Gene ID /WP=CE07922 /GEN=gei-6 /TR=O16310 /GB=AAB65371.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072435(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072435 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-6) (gei-6) mRNA, complete cds. 11/11 None
SNAP00000024623 ENSEMBL cdna:SNAP chromosome:CEL140:V:7229130:7233438:-1 11/11 None
GENEFINDER00000024632 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7229130:7233438:-1 11/11 None
C05C8.4 ENSEMBL cdna:known chromosome:CEL140:V:7228971:7233441:-1 gene:C05C8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7229130-7233439(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gei-6
Ensembl C05C8.4
Entrez Gene 179114 Entrez gene
SwissProt O16310 EMBL-EBI
WormBase CE07922 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65371 Gex interacting protein protein 6 [Caenorhabditis elegans] ref|NP_504836.1| GEX Interacting protein family member (gei-6) [Caenorhabditis elegans] 0.0
blast CAE72027 Hypothetical protein CBG19109 [Caenorhabditis briggsae] 1.0E-175
blast CAE72031 Hypothetical protein CBG19113 [Caenorhabditis briggsae] 3.0E-13
Sequence
Target Sequence 
>C. ELEGANS:187975_S_AT
aaagcatcgccggctcaaaatccgaataagccaaatactccagctcagaagcagaataag
ttcaatggctctccaaataagaaaccaaatatgagacccgtcaatcgtactggtaattca
caagctcctccctggcaaagatcccgacaaccatcaccacctccatcaaatcagtcgcca
tggcgtcaacaacctcagcaacaatatggaatacaatcgaatcagaatcgaggtttccaa
atggatttgggtatggacaggccttggagcgattctccgtctgggccaagtggttcacgt
tcaaataacagcttctccgacctaccatggcatcgagctcaagatactccattcggaaaa
gttcctatacaggacaattttgcgatgagtggaccacgtccgatgcctccgcgtcctatg
ccacctcaacaatctccgttctttaataatgctcctggaaacggcttctatccaccacaa
ccacgtgatttttccccgccgcaacctccacaacaatctcgaatgttcccaccgtctcag
ccaccatttggatacgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCATCGCCGGCTCAAAATCCGA 112 123 2728 Antisense
GAGACCCGTCAATCGTACTGGTAAT 592 391 2820 Antisense
TACTGGTAATTCACAAGCTCCTCCC 449 647 2835 Antisense
CAGTCGCCATGGCGTCAACAACCTC 188 207 2899 Antisense
ATGGACAGGCCTTGGAGCGATTCTC 131 53 2980 Antisense
CCTACCATGGCATCGAGCTCAAGAT 650 267 3048 Antisense
CGATGAGTGGACCACGTCCGATGCC 461 249 3110 Antisense
ACCTCAACAATCTCCGTTCTTTAAT 475 87 3150 Antisense
GCTCCTGGAAACGGCTTCTATCCAC 704 295 3178 Antisense
ATCCACCACAACCACGTGATTTTTC 326 39 3197 Antisense
GTCTCAGCCACCATTTGGATACGCT 339 469 3261 Antisense
Sequence Source Affymetrix Proprietary Database