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[187972_at]

Description C03C11.2 /REP_DB=WormBase Gene ID /WP=CE07874 /GEN=fog-3 /TR=Q9XTH6 /GB=CAB02725.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 96      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_total > 86      4grp_total > 32      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 108
(-3)
P 		189.5
(-0.6)
P 		308.7
(3)
P 		243.7
(1.1)
P 		201
B 105
(-3)
P 		226.7
(1.3)
P 		227.9
(1.3)
P 		274.6
(3)
P 		170
C 163
(-3)
P 		198.7
(-1.3)
P 		206.6
(-1)
P 		291
(3)
P 		128
avr 125.3
(-3) 		205
(0.3) 		247.7
(2.1) 		269.8
(3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 545
1 2 3 4 5 6 range
A 102.5
(-3)
P 		107.7
(-2.9)
P 		167.3
(-2.1)
P 		252.8
(-0.9)
P 		346.1
(0.4)
P 		526.5
(3)
P 		424
B 93.3
(-3)
A 		98.9
(-2.9)
P 		182.9
(-1.8)
P 		244.5
(-1)
P 		311.8
(-0.1)
P 		538.6
(3)
P 		445
C 63.9
(-3)
A 		116.5
(-2.4)
P 		142.1
(-2.1)
P 		310.6
(-0.3)
P 		315.8
(-0.2)
P 		609.2
(3)
P 		545
avr 86.6
(-3) 		107.7
(-2.7) 		164.1
(-2) 		269.3
(-0.7) 		324.6
(0) 		558.1
(3) 		472
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 39.3
(-2.5)
P 		41.1
(-2.3)
P 		80.7
(3)
P 		35.7
(-3)
P 		45
B 33.5
(-3)
P 		56
(2.4)
P 		52.8
(1.6)
P 		58.5
(3)
P 		25
C 54
(-1.7)
P 		57.1
(-0.9)
P 		72
(3)
P 		49.1
(-3)
P 		23
avr 42.3
(-3) 		51.4
(-0.9) 		68.5
(3) 		47.8
(-1.7) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 18.9
(-3)
P 		38.3
(-1.9)
P 		36.4
(-2)
P 		64.1
(-0.5)
P 		104.4
(1.7)
P 		128.2
(3)
P 		109
B 32.5
(-3)
A 		32.9
(-3)
P 		44.4
(-2.6)
P 		64.8
(-1.8)
P 		126.7
(0.4)
P 		200.8
(3)
P 		168
C 23.7
(-3)
A 		35.6
(-2.6)
P 		36.2
(-2.6)
P 		62.5
(-1.7)
P 		102.2
(-0.4)
P 		203.9
(3)
P 		180
avr 25
(-3) 		35.6
(-2.6) 		39
(-2.4) 		63.8
(-1.5) 		111.1
(0.4) 		177.6
(3) 		153
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187972_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2119
Sequence Type Exemplar sequence
Representative Public ID C03C11.2 NCBI
Target Description C03C11.2 /REP_DB=WormBase Gene ID /WP=CE07874 /GEN=fog-3 /TR=Q9XTH6 /GB=CAB02725.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060245(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060245 NCBI Caenorhabditis elegans Feminization Of Germline family member (fog-3) (fog-3) mRNA, complete cds. 11/11 None
SNAP00000030079 ENSEMBL cdna:SNAP chromosome:CEL140:I:10024899:10026049:1 11/11 None
GENEFINDER00000030080 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10024899:10026049:1 11/11 None
C03C11.2 ENSEMBL cdna:known chromosome:CEL140:I:10024899:10026158:1 gene:C03C11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10024829-10025980(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol fog-3
Ensembl C03C11.2
Entrez Gene 172863 Entrez gene
SwissProt Q9XTH6 EMBL-EBI
WormBase CE07874 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02725 Hypothetical protein C03C11.2 [Caenorhabditis elegans] ref|NP_492646.1| Feminization Of Germline family member (fog-3) [Caenorhabditis elegans] emb|CAA09770.1| FOG-3 protein [Caenorhabditis elegans] 1.0E-141
blast AAT72458 FOG-3 [Caenorhabditis japonica] gb|AAT72407.1| FOG-3 [Caenorhabditis japonica] 3.0E-80
blast AAT72457 FOG-3 [Caenorhabditis sp. CB5161] gb|AAT72406.1| FOG-3 [Caenorhabditis sp. CB5161] 3.0E-80
Sequence
Target Sequence 
>C. ELEGANS:187972_AT
cacaaccacttctttatgctttgcaagttctgccgaagaagctggagtccctccgagtga
tgttctgcgtctacttccaacaaacatgatcatttttgccaatccgggccacgtcttcgt
tcgtttatcggagaacggaatcgaaacaccgatttggattggagatgtgaactgcgatga
gaactaccaatcagtccccgagtacgtggtcagaaccgctgcaatccgcgcggagccttg
ctcgaatcttggagcagctgggaaatcggttcttgttggaaaaaagccgcttctcaccaa
cgacaaagctgctctcgaaatggtcaacacaatgtattctccattggcgcgagagaaatg
tgatgatatcaacgcaaatctctctcatcttcgggagatgtatccattccgcttcgtcta
caagccgtcatctgctcaaaccttcagtggcgttgagttctcacagactcgtttcggatc
tagcaaatctcgtccggatcttcagacaatggatgtcatcaagtacctcagctctcagca
agttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAACCACTTCTTTATGCTTTGCA 53 195 189 Antisense
TCTGCGTCTACTTCCAACAAACATG 612 609 252 Antisense
GATCATTTTTGCCAATCCGGGCCAC 247 421 276 Antisense
CCACGTCTTCGTTCGTTTATCGGAG 184 275 297 Antisense
GTACGTGGTCAGAACCGCTGCAATC 470 459 390 Antisense
ATATCAACGCAAATCTCTCTCATCT 497 19 554 Antisense
TCGGGAGATGTATCCATTCCGCTTC 662 603 579 Antisense
GTCATCTGCTCAAACCTTCAGTGGC 374 467 615 Antisense
CTCACAGACTCGTTTCGGATCTAGC 379 227 648 Antisense
GCAAATCTCGTCCGGATCTTCAGAC 581 317 671 Antisense
AAGTACCTCAGCTCTCAGCAAGTTT 123 157 709 Antisense
Sequence Source Affymetrix Proprietary Database