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[187968_at] lipase

Description F45E6.4 /REP_DB=WormBase Gene ID /WP=CE03339 /TR=Q20437 /GB=CAA92178.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=lipase
Cluster 6grp_total > 25      4grp_total > 31      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 143.5
(3)
A 		63.7
(-2.6)
A 		80.8
(-1.4)
A 		57.8
(-3)
A 		86
B 142.4
(3)
P 		116.7
(1)
A 		65.3
(-3)
A 		102.5
(-0.1)
A 		77
C 128.2
(0.9)
A 		60.8
(-3)
A 		103.8
(-0.5)
A 		163.3
(3)
A 		103
avr 138
(3) 		80.4
(-3) 		83.3
(-2.7) 		107.9
(-0.1) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 97.7
(3)
A 		66.5
(0.1)
A 		40.6
(-2.4)
A 		67.5
(0.2)
A 		34
(-3)
A 		49.8
(-1.5)
A 		64
B 136.5
(3)
A 		109.1
(1.2)
A 		85.9
(-0.3)
A 		43.4
(-3)
A 		58.6
(-2)
A 		54.2
(-2.3)
A 		93
C 98.4
(2)
M 		110.4
(3)
A 		75.1
(0.1)
A 		45.4
(-2.3)
A 		36.6
(-3)
A 		56.6
(-1.4)
A 		74
avr 110.9
(3) 		95.3
(1.6) 		67.2
(-0.9) 		52.1
(-2.2) 		43.1
(-3) 		53.5
(-2.1) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 52.2
(3)
A 		13.8
(-2.3)
A 		21.1
(-1.3)
A 		8.5
(-3)
A 		44
B 45.4
(3)
P 		28.8
(-0.3)
A 		15.1
(-3)
A 		21.8
(-1.7)
A 		30
C 42.4
(3)
A 		17.5
(-3)
A 		36.2
(1.5)
A 		27.5
(-0.6)
A 		25
avr 46.7
(3) 		20
(-2.8) 		24.1
(-1.9) 		19.3
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 18
(0.7)
A 		23.7
(3)
A 		8.8
(-3)
A 		17.1
(0.3)
A 		10.3
(-2.4)
A 		12.1
(-1.7)
A 		15
B 47.5
(3)
A 		36.3
(1.1)
A 		20.9
(-1.4)
A 		11.5
(-3)
A 		23.8
(-1)
A 		20.2
(-1.6)
A 		36
C 36.5
(3)
M 		33.7
(2.4)
A 		19.1
(-0.8)
A 		9.1
(-3)
A 		11.8
(-2.4)
A 		18.9
(-0.9)
A 		27
avr 34
(3) 		31.2
(2.2) 		16.3
(-2) 		12.6
(-3) 		15.3
(-2.2) 		17.1
(-1.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187968_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16322
Sequence Type Exemplar sequence
Representative Public ID F45E6.4 NCBI
Target Description F45E6.4 /REP_DB=WormBase Gene ID /WP=CE03339 /TR=Q20437 /GB=CAA92178.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=lipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077695(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077695 NCBI Caenorhabditis elegans F45E6.4 (lipase) mRNA, complete cds. 11/11 None
SNAP00000017826 ENSEMBL cdna:SNAP chromosome:CEL140:X:12492833:12495537:1 11/11 None
GENEFINDER00000017829 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12492833:12495537:1 11/11 None
F45E6.4 ENSEMBL cdna:known chromosome:CEL140:X:12492785:12495537:1 gene:F45E6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12492784-12495537(+) 100.0 100.0
Public Domain and Genome References
Gene Title lipase
Ensembl F45E6.4
Entrez Gene 185800 Entrez gene
SwissProt Q20437 EMBL-EBI
WormBase CE03339 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16298 lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92178 Hypothetical protein F45E6.4 [Caenorhabditis elegans] ref|NP_510096.1| F45E6.4 [Caenorhabditis elegans] 0.0
blast CAE57238 Hypothetical protein CBG00116 [Caenorhabditis briggsae] 1.0E-130
blast CAE57238 Hypothetical protein CBG00116 [Caenorhabditis briggsae] 1.0E-128
blast CAA93529 Hypothetical protein C04B4.3 [Caenorhabditis elegans] ref|NP_510049.1| C04B4.3 [Caenorhabditis elegans] 3.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 1.0E-126
Pfam IPR002918 EMBL-EBI Lipase, class 2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187968_AT
aatgtgcagcttcaccgacgatttctcgagtttgtcttacattacacaaaagccaaacaa
atcaacattgttgcgcactctatgggtgtcagcattgcccgaaaagcgattcagggtggc
gagtttgtgaccaaaactgagtcttgcgacatcggacccaacctatcgcatcgaattggc
actttcattgctcttgcgtcagcaaactatggaatgtgcccatgtcaacatgcatttgcc
tttccagcttgcggaatggaaacgggattctttcctggcacctgcccagaaatgacttgt
tcatctcaagatgtgaatatatcagagacgtgcggagaagtaccctactccaactatctg
atgaacctgaataatagtggaaagaaggacgcatcatttgttgcaagcttatggagtgat
gacgatgaaattcttggaaaaggaaacatggtttggggacggcaaacgtctttagttcca
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTGCAGCTTCACCGACGATTTC 476 163 403 Antisense
ACGATTTCTCGAGTTTGTCTTACAT 636 93 420 Antisense
GTTGCGCACTCTATGGGTGTCAGCA 444 439 472 Antisense
AAACTGAGTCTTGCGACATCGGACC 566 125 536 Antisense
GACCCAACCTATCGCATCGAATTGG 511 381 557 Antisense
GAATTGGCACTTTCATTGCTCTTGC 547 323 575 Antisense
GTCAACATGCATTTGCCTTTCCAGC 286 465 626 Antisense
TTTCCTGGCACCTGCCCAGAAATGA 49 669 673 Antisense
GAGACGTGCGGAGAAGTACCCTACT 70 331 727 Antisense
TACCCTACTCCAACTATCTGATGAA 507 649 743 Antisense
GACGGCAAACGTCTTTAGTTCCACA 628 223 860 Antisense
Sequence Source Affymetrix Proprietary Database