[Home] | [Total List]

[187966_at] dynein

Description B0365.7 /REP_DB=WormBase Gene ID /WP=CE07724 /TR=P90736 /GB=CAB03163.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dynein
Cluster 6grp_total > 0      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 8.7
(-2.2)
A 		2
(-3)
A 		2.4
(-3)
A 		54.8
(3)
A 		53
B 3.4
(3)
A 		2.2
(-3)
A 		2.2
(-3)
A 		2.6
(-1)
A 		1
C 0.9
(-3)
A 		2.4
(-1.3)
A 		1.3
(-2.5)
A 		6.1
(3)
A 		5
avr 4.3
(-2.3) 		2.2
(-2.9) 		2
(-3) 		21.2
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.2
(-2.3)
A 		1.1
(-2.5)
A 		2.2
(0.3)
A 		3.3
(3)
A 		0.9
(-3)
A 		1.1
(-2.5)
A 		2
B 1.4
(2.5)
A 		1.5
(3)
A 		1
(0.3)
A 		1.1
(0.8)
A 		0.6
(-1.9)
A 		0.4
(-3)
A 		1
C 0.6
(-3)
A 		6.6
(3)
A 		1.4
(-2.2)
A 		3
(-0.6)
A 		4.3
(0.7)
A 		1.8
(-1.8)
A 		6
avr 1.1
(-3) 		3.1
(3) 		1.5
(-1.8) 		2.5
(1.2) 		1.9
(-0.6) 		1.1
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.2
(-0.8)
A 		0.4
(-3)
A 		0.6
(-2.8)
A 		8
(3)
A 		8
B 1.1
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.6
(-2)
A 		1
C 0.3
(-3)
A 		0.7
(0.4)
A 		0.4
(-2.1)
A 		1
(3)
A 		1
avr 1.5
(-0.8) 		0.5
(-3) 		0.5
(-3) 		3.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.4
(-1)
A 		0.5
(-0)
A 		0.8
(3)
A 		0.3
(-2)
A 		0.3
(-2)
A 		1
B 0.5
(3)
A 		0.5
(3)
A 		0.2
(-1.5)
A 		0.3
(-0)
A 		0.2
(-1.5)
A 		0.1
(-3)
A 		0
C 0.2
(-3)
A 		2
(3)
A 		0.4
(-2.3)
A 		0.6
(-1.7)
A 		1.4
(1)
A 		0.6
(-1.7)
A 		2
avr 0.3
(-3) 		1
(3) 		0.4
(-2.1) 		0.6
(-0.4) 		0.6
(-0.4) 		0.3
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187966_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12829
Sequence Type Exemplar sequence
Representative Public ID B0365.7 NCBI
Target Description B0365.7 /REP_DB=WormBase Gene ID /WP=CE07724 /TR=P90736 /GB=CAB03163.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dynein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073871(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073871 NCBI Caenorhabditis elegans B0365.7 (dynein) mRNA, complete cds. 11/11 None
GENEFINDER00000032440 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13141386:13152361:1 10/11 None
B0365.7 ENSEMBL cdna:known chromosome:CEL140:V:13141571:13152545:1 gene:B0365.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032433 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13141570-13152545(+) 100.0 100.0
Public Domain and Genome References
Gene Title dynein
Ensembl B0365.7
Entrez Gene 179798 Entrez gene
SwissProt P90736 EMBL-EBI
WormBase CE07724 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03163 Hypothetical protein B0365.7 [Caenorhabditis elegans] emb|CAB02695.1| Hypothetical protein B0365.7 [Caenorhabditis elegans] ref|NP_506272.1| B0365.7 [Caenorhabditis elegans] 0.0
blast CAE64659 Hypothetical protein CBG09431 [Caenorhabditis briggsae] 0.0
blast XP_395692 PREDICTED: similar to dynein, axonemal, heavy polypeptide 3 [Apis mellifera] 2.0E-71
blast XP_395692 PREDICTED: similar to dynein, axonemal, heavy polypeptide 3 [Apis mellifera] 3.0E-60
Sequence
Target Sequence 
>C. ELEGANS:187966_AT
actattccatgtgatctaaagactctggttatgcttgtggaagatccgatttgctttgtg
aatgatgataatcgagcatttgaaattttacaatcgaaattcgagaaaatcgttgtaaca
aacaagtggacagaagttgagaggcaacaatgtctaacattgaattcatcgattttgttt
gaaaactgcatggaaaatactcgaatggtaaaagaaattgaagaagctgaatattatagt
cagatggaagatgaaattgtatttaaaattgggaacgcccaccatgaagtgaataagaat
ttccgagtgttcttccgaactagggcatcagaaacaactttgcataattcaatagtaata
gataatcggtatagtgatgaagagctcagacatgagatttgtgaaacaatgggttcatct
aattggtttgaaactttgaatcattttaatgaaatggttgaatctcgaaataatgatata
tcaatgatggaaaacaccgaaaatgaaatgttggacttattgggaagatccaaagatttg
gatgatgagagagcaattgatttattagcagaagccagaaatctacaagcttccatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTATTCCATGTGATCTAAAGACTC 100 103 7282 Antisense
TAAAGACTCTGGTTATGCTTGTGGA 235 641 7298 Antisense
GTGGAAGATCCGATTTGCTTTGTGA 376 491 7318 Antisense
GTTGAGAGGCAACAATGTCTAACAT 514 437 7417 Antisense
GTCTAACATTGAATTCATCGATTTT 678 469 7433 Antisense
TTGGGAACGCCCACCATGAAGTGAA 254 693 7550 Antisense
TAAGAATTTCCGAGTGTTCTTCCGA 623 637 7575 Antisense
TGTTCTTCCGAACTAGGGCATCAGA 118 563 7589 Antisense
AGGGCATCAGAAACAACTTTGCATA 210 57 7603 Antisense
ACAATGGGTTCATCTAATTGGTTTG 264 113 7687 Antisense
GCCAGAAATCTACAAGCTTCCATTA 232 271 7855 Antisense
Sequence Source Affymetrix Proprietary Database