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[187964_at] lipase

Description F54F3.3 /REP_DB=WormBase Gene ID /WP=CE18732 /TR=Q93789 /GB=CAB01973.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=lipase
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 33      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 32      6grp_total > 21      4grp_total > 62      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 988
1 2 3 4 range
A 970.6
(3)
P 		530.6
(0)
P 		502.3
(-0.2)
P 		86.6
(-3)
P 		884
B 1074.1
(3)
P 		384.6
(-1.2)
P 		530.9
(-0.3)
P 		96.4
(-3)
P 		978
C 950.2
(3)
P 		427.7
(-0.8)
P 		507.2
(-0.2)
P 		119.4
(-3)
P 		831
avr 998.3
(3) 		447.6
(-0.7) 		513.5
(-0.2) 		100.8
(-3) 		898

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1549
1 2 3 4 5 6 range
A 965.1
(-0.4)
P 		1801.1
(3)
P 		1311.8
(1)
P 		1000.1
(-0.2)
P 		1292
(1)
P 		308.5
(-3)
P 		1493
B 811
(-0.4)
P 		1534.4
(3)
P 		1288.3
(1.8)
P 		840.5
(-0.3)
P 		1530.3
(3)
P 		262
(-3)
P 		1272
C 926.1
(0.1)
P 		1560.3
(3)
P 		1401.1
(2.3)
P 		845.2
(-0.3)
P 		1328.6
(1.9)
P 		252.1
(-3)
P 		1308
avr 900.7
(-0.2) 		1631.9
(3) 		1333.7
(1.7) 		895.3
(-0.3) 		1383.6
(1.9) 		274.2
(-3) 		1358
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 341
1 2 3 4 range
A 353.4
(3)
P 		115.2
(-1.2)
P 		131.3
(-0.9)
P 		12.7
(-3)
P 		341
B 342.5
(3)
P 		95
(-1.6)
P 		123
(-1.1)
P 		20.6
(-3)
P 		322
C 314.5
(3)
P 		123
(-0.9)
P 		176.8
(0.2)
P 		20.1
(-3)
P 		294
avr 336.8
(3) 		111.1
(-1.2) 		143.7
(-0.6) 		17.8
(-3) 		319

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 566
1 2 3 4 5 6 range
A 177.9
(-1.9)
P 		640.6
(3)
P 		285.7
(-0.8)
P 		253.6
(-1.1)
P 		389.9
(0.3)
P 		75.1
(-3)
P 		566
B 282.2
(-0.9)
P 		510.7
(1.7)
P 		312.8
(-0.5)
P 		222.6
(-1.6)
P 		621.7
(3)
P 		97.7
(-3)
P 		524
C 343.3
(1)
P 		476.1
(3)
P 		356.6
(1.2)
P 		170
(-1.7)
P 		429.9
(2.3)
P 		84.4
(-3)
P 		392
avr 267.8
(-0.6) 		542.5
(3) 		318.4
(0.1) 		215.4
(-1.3) 		480.5
(2.2) 		85.7
(-3) 		457
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187964_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14151
Sequence Type Exemplar sequence
Representative Public ID F54F3.3 NCBI
Target Description F54F3.3 /REP_DB=WormBase Gene ID /WP=CE18732 /TR=Q93789 /GB=CAB01973.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=lipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073828 NCBI Caenorhabditis elegans F54F3.3 (lipase) mRNA, complete cds. 11/11 None
SNAP00000002936 ENSEMBL cdna:SNAP chromosome:CEL140:V:12922597:12924184:1 11/11 None
GENEFINDER00000002941 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12922597:12924184:1 11/11 None
F54F3.3 ENSEMBL cdna:known chromosome:CEL140:V:12922597:12924249:1 gene:F54F3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002938 1/11 Cross Hyb Matching Probes None
F54F3.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12922596-12924184(+) 100.0 100.0
Public Domain and Genome References
Gene Title lipase
Ensembl F54F3.3
Entrez Gene 179771 Entrez gene
SwissProt Q93789 EMBL-EBI
WormBase CE18732 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597337_AT similar to lipase-like, ab-hydrolase domain containing 1 cfa
CANINE_2:CFA.13420.1.A1_AT similar to lipase-like, ab-hydrolase domain containing 1 cfa
DROSOPHILA_2:1624505_AT dm
DROSGENOME1:146165_AT dm
U133_X3P:HS2.435924.1.S1_3P_S_AT lipase-like, ab-hydrolase domain containing 1 hs
U133_X3P:HS2.304654.1.S1_3P_AT lipase-like, ab-hydrolase domain containing 1 hs
U133_X3P:1569874_3P_S_AT lipase-like, ab-hydrolase domain containing 1 hs
HG-U133_PLUS_2:1569571_AT lipase-like, ab-hydrolase domain containing 1 hs
HG-U133_PLUS_2:1569874_S_AT lipase-like, ab-hydrolase domain containing 1 hs
U133_X3P:HS2.435924.1.S1_3P_AT Lipase-like, ab-hydrolase domain containing 1 hs
HG-U133_PLUS_2:1569873_AT Lipase-like, ab-hydrolase domain containing 1 hs
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
16789 carboxylic ester hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01973 Hypothetical protein F54F3.3 [Caenorhabditis elegans] ref|NP_506229.1| F54F3.3 [Caenorhabditis elegans] 0.0
blast CAE64718 Hypothetical protein CBG09504 [Caenorhabditis briggsae] 0.0
blast CAE58265 Hypothetical protein CBG01370 [Caenorhabditis briggsae] 1.0E-177
Protein Domains
Database ID Description E-Value
Pfam IPR006693 EMBL-EBI Ab-hydrolase associated lipase region 1.1E-44
Sequence
Target Sequence 
>C. ELEGANS:187964_AT
tctttgctgattacttttcccttgaatttgatggatggtttgatgtatttggttctggtg
aattccttccaaacaattggattatgaagcttgtctctgaatcggtttgcgctggactta
aagttgaagctggagtttgtgacgatgtgatgttcctcattgctgggccggaatccaacc
agcttaacgcaactcgtgttccaatttatgtggcacatacacccgcaggaacttctactc
aaaatattgttcactggattcaaatggtccgccacggaggcactccaaaatatgactatg
gagagaagggaaataagaaacattacggacaagcaaatgttccagcatacgacttcacta
ctgtaaaccgaccagtctatttgtactggggcgattctgattggcttgccgacccgaccg
acgtcacagatttcttgctaacgcacttgaatccatcaactgttgtgcaaaacaataagt
tgatcgattacaaccatctcgatttcatctggggactccgtgcaccgaaagacatctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTGCTGATTACTTTTCCCTTGA 285 615 644 Antisense
GGTTCTGGTGAATTCCTTCCAAACA 496 507 694 Antisense
GCTTGTCTCTGAATCGGTTTGCGCT 246 307 732 Antisense
GACGATGTGATGTTCCTCATTGCTG 394 379 784 Antisense
GAATCCAACCAGCTTAACGCAACTC 106 329 814 Antisense
ACTGGATTCAAATGGTCCGCCACGG 489 95 896 Antisense
GTTCCAGCATACGACTTCACTACTG 439 441 982 Antisense
GGGCGATTCTGATTGGCTTGCCGAC 359 491 1032 Antisense
GTCACAGATTTCTTGCTAACGCACT 257 465 1066 Antisense
CATCTCGATTTCATCTGGGGACTCC 447 211 1138 Antisense
ACTCCGTGCACCGAAAGACATCTAT 461 99 1158 Antisense
Sequence Source Affymetrix Proprietary Database