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[187963_at]

Description F14F7.4_rc /REP_DB=WormBase Gene ID /WP=CE15824 /TR=O17804 /GB=CAB04110.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 02      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 27
(-2.4)
P 		35.6
(-1.5)
M 		21.6
(-3)
A 		76.2
(3)
A 		55
B 29.1
(-2.4)
A 		26.8
(-3)
A 		49.3
(3)
A 		28.5
(-2.5)
A 		23
C 36
(-0.7)
A 		48.9
(0.8)
P 		16.7
(-3)
A 		67.8
(3)
A 		51
avr 30.7
(-2.7) 		37.1
(-1.3) 		29.2
(-3) 		57.5
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 20.6
(-1)
A 		38.7
(3)
P 		16.2
(-2)
A 		11.6
(-3)
A 		33.3
(1.8)
A 		16.8
(-1.8)
A 		27
B 30.5
(0.7)
P 		22.5
(-0.9)
A 		14.3
(-2.6)
A 		41.7
(3)
A 		19.4
(-1.5)
A 		12.1
(-3)
A 		30
C 24.7
(0.2)
A 		41.1
(3)
A 		14.7
(-1.6)
A 		7.3
(-2.9)
A 		16.3
(-1.3)
A 		6.5
(-3)
A 		35
avr 25.3
(0.6) 		34.1
(3) 		15.1
(-2.1) 		20.2
(-0.7) 		23
(0) 		11.8
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9.8
(1.5)
P 		7.7
(-0.8)
M 		5.7
(-3)
A 		11.2
(3)
A 		6
B 9.3
(0.6)
A 		6.6
(-2.4)
A 		11.4
(3)
A 		6.1
(-3)
A 		5
C 11.9
(1.4)
A 		14.1
(3)
P 		5.8
(-3)
A 		11.4
(1)
A 		8
avr 10.3
(3) 		9.5
(1.2) 		7.6
(-3) 		9.6
(1.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.8
(-2.5)
A 		13.8
(3)
P 		3.5
(-2.7)
A 		2.9
(-3)
A 		10
(0.9)
A 		4.1
(-2.3)
A 		11
B 10.6
(2.7)
P 		7.5
(0.2)
A 		3.5
(-3)
A 		11
(3)
A 		7.9
(0.5)
A 		4.5
(-2.2)
A 		8
C 9.2
(1.2)
A 		12.5
(3)
A 		3.7
(-1.8)
A 		1.5
(-3)
A 		5.3
(-0.9)
A 		2.2
(-2.6)
A 		11
avr 7.9
(0.4) 		11.3
(3) 		3.6
(-3) 		5.1
(-1.8) 		7.7
(0.2) 		3.6
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187963_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28126
Sequence Type Exemplar sequence
Representative Public ID F14F7.4 NCBI
Target Description F14F7.4_rc /REP_DB=WormBase Gene ID /WP=CE15824 /TR=O17804 /GB=CAB04110.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F14F7.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F14F7.4 F14F7.4_rc /REP_DB=WormBase Gene ID /WP=CE15824 /TR=O17804 /GB=CAB04110.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067305 11/11 Negative Strand Matching Probes A 
SNAP00000000291 11/11 Negative Strand Matching Probes None
GENEFINDER00000000296 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13027954-13029176(+) 94.02 100.0
Public Domain and Genome References
Ensembl F14F7.4
Sequence
Target Sequence 
>C. ELEGANS:187963_AT
taatagtctttctggtgtcctcatcttcagattcaaatccaacgtgcatagcagtgccga
ctttatttttcaccgagatgacactttcagacgacttgctttttccgattttatttattt
cagctgaaacatctgagaaaatgctgcattttctcagatgtttcagaatttgtggcttca
aattaatctgcggtttcagttgaaaagcccatcccatgactttatccaacgtggcaattc
caaaagtccatttggaaatcgattgaaaaacgaagaaatatgtcatataaacggcagctt
tctccttcaatgagcccgttatcggagcgattccggagcctttcgtcttgaatttcttga
gaacttctagagaaacagcgaaaactagaatatatgccaggtagagatgaaagaggaggt
atgcagtgatacaatcaactgggtattggattgaaatcgggatgatcacacggatatacg
atgtgtatattgagtagaactcggagaatcggattccatttgacaacgcttttgtacact
tgacagtcacttctttccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATAGTCTTTCTGGTGTCCTCATC 369 633 318 Antisense
GTGTCCTCATCTTCAGATTCAAATC 591 487 332 Antisense
CCAACGTGCATAGCAGTGCCGACTT 245 277 356 Antisense
TGCCGACTTTATTTTTCACCGAGAT 225 585 372 Antisense
GACACTTTCAGACGACTTGCTTTTT 225 367 397 Antisense
GAAAAGCCCATCCCATGACTTTATC 108 355 519 Antisense
TCATATAAACGGCAGCTTTCTCCTT 93 613 600 Antisense
TGAGCCCGTTATCGGAGCGATTCCG 450 567 628 Antisense
GAGCCTTTCGTCTTGAATTTCTTGA 150 385 653 Antisense
GAATCGGATTCCATTTGACAACGCT 624 327 823 Antisense
ACACTTGACAGTCACTTCTTTCCCA 500 109 853 Antisense
Sequence Source Affymetrix Proprietary Database