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[187959_s_at]

Description C16E9.4 /REP_DB=WormBase Gene ID /WP=CE25779 /GEN=inx-1 /TR=Q18049 /GB=AAC47958.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 04      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_total > 04      4grp_total > 37      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 189.6
(3)
P 		153.7
(0.1)
P 		115
(-3)
P 		184.1
(2.6)
P 		75
B 133.5
(3)
P 		121.9
(1.7)
P 		79.8
(-3)
P 		104.1
(-0.3)
P 		54
C 134.1
(3)
P 		132.6
(2.9)
P 		58.2
(-3)
P 		124.1
(2.2)
P 		76
avr 152.4
(3) 		136.1
(1.6) 		84.3
(-3) 		137.4
(1.7) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 145.9
(3)
P 		97
(-0.1)
P 		61.2
(-2.4)
P 		68.9
(-1.9)
P 		96.7
(-0.1)
P 		52.1
(-3)
A 		94
B 143.6
(3)
P 		118
(1.3)
P 		118.6
(1.3)
P 		65.7
(-2.3)
P 		64.9
(-2.3)
P 		55
(-3)
P 		89
C 100.5
(-0.1)
P 		150.5
(3)
P 		94.7
(-0.5)
P 		98.5
(-0.2)
P 		66.9
(-2.2)
P 		53.6
(-3)
P 		97
avr 130
(3) 		121.8
(2.4) 		91.5
(-0) 		77.7
(-1.1) 		76.2
(-1.2) 		53.6
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 69
(3)
P 		33.4
(-2.1)
P 		30.1
(-2.6)
P 		27
(-3)
P 		42
B 42.6
(3)
P 		30.1
(-0.1)
P 		18.5
(-3)
P 		22.2
(-2.1)
P 		24
C 44.4
(3)
P 		38.1
(1.4)
P 		20.3
(-3)
P 		20.9
(-2.9)
P 		24
avr 52
(3) 		33.9
(-0.7) 		23
(-3) 		23.4
(-2.9) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 26.9
(0.9)
P 		34.5
(3)
P 		13.3
(-2.8)
P 		17.5
(-1.7)
P 		29.2
(1.5)
P 		12.7
(-3)
A 		22
B 50
(3)
P 		39.3
(1)
P 		28.8
(-0.9)
P 		17.4
(-3)
P 		26.4
(-1.3)
P 		20.5
(-2.4)
P 		33
C 37.3
(1.2)
P 		45.9
(3)
P 		24.1
(-1.7)
P 		19.8
(-2.6)
P 		21.7
(-2.2)
P 		17.9
(-3)
P 		28
avr 38.1
(2.5) 		39.9
(3) 		22.1
(-1.7) 		18.2
(-2.7) 		25.8
(-0.7) 		17
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187959_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16532
Sequence Type Exemplar sequence
Representative Public ID C16E9.4 NCBI
Target Description C16E9.4 /REP_DB=WormBase Gene ID /WP=CE25779 /GEN=inx-1 /TR=Q18049 /GB=AAC47958.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171716(11), NM_001029236(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171716 NCBI Caenorhabditis elegans INneXin family member (inx-1) (inx-1) mRNA, complete cds. 11/11 A 
NM_001029236 NCBI Caenorhabditis elegans INneXin family member (inx-1) (inx-1) mRNA, complete cds. 11/11 None
C16E9.4a ENSEMBL cdna:known chromosome:CEL140:X:6943690:6956348:-1 gene:C16E9.4 11/11 A 
C16E9.4b ENSEMBL cdna:known chromosome:CEL140:X:6944711:6949506:-1 gene:C16E9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015452 6/11 Cross Hyb Matching Probes None
GENEFINDER00000015454 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6944741-6951468(-) 98.61 98.61
Public Domain and Genome References
Ensembl C16E9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN71842 Innexin protein 1, isoform a [Caenorhabditis elegans] ref|NP_741826.1| INneXin family member (inx-1) [Caenorhabditis elegans] gb|AAB09671.1| transmembrane protein 0.0
blast CAE65824 Hypothetical protein CBG10939 [Caenorhabditis briggsae] 0.0
blast AAN71843 Innexin protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024407.1| INneXin family member (inx-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741826.1 4 27-49,102-124,188-210,278-300
NP_001024407.1 5 27-49,102-124,188-210,278-300,345-367
C16E9.4a 4 27-49,102-124,188-210,278-300
C16E9.4b 5 27-49,102-124,188-210,278-300,345-367
Sequence
Target Sequence 
>C. ELEGANS:187959_S_AT
gggaactttccacgtgtaactatgtgtgatttcgaggtacgagtactgggtaatgtgcat
catcatacagtccaatgcgtgctaatgattaacatgtttaatgagaaaatatttttgttc
ctttggttctggtacttcatggtagcttttgtgtcagcagtgtccatgttccattggatt
attatatctttcttaccaggacagcacatgaagttcatcagaaaatatctacgagctaca
gatttggcaactgacaggcagtcggtgaaaaagtttgttcacaagttcctcggatatgat
ggagtgttttgtatgagaatgatttcggcacatgctggagatattcttgctacagaacta
attgttgctctgtggcataacttcaatgatcgtgtcaggaagagtccaatcgagatgttc
gaaggcggtgtcactcagtcacctagcaaattagacgccaatttcaaaacgtggcttctc
ggccagacgaggggcaagccgcccttcgacggctcaaatccgacgcgtggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAACTTTCCACGTGTAACTATGT 42 495 883 Antisense
ATCATCATACAGTCCAATGCGTGCT 145 29 941 Antisense
TGTTCCTTTGGTTCTGGTACTTCAT 23 563 998 Antisense
GGTACTTCATGGTAGCTTTTGTGTC 281 505 1013 Antisense
TTGTGTCAGCAGTGTCCATGTTCCA 311 709 1031 Antisense
ATATCTTTCTTACCAGGACAGCACA 74 21 1066 Antisense
AGATGTTCGAAGGCGGTGTCACTCA 576 67 1295 Antisense
TGTCACTCAGTCACCTAGCAAATTA 414 559 1311 Antisense
TCAAAACGTGGCTTCTCGGCCAGAC 558 629 1346 Antisense
TCGGCCAGACGAGGGGCAAGCCGCC 654 605 1361 Antisense
ACGGCTCAAATCCGACGCGTGGAAA 251 93 1391 Antisense
Sequence Source Affymetrix Proprietary Database