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[187957_at]

Description C33G3.1 /REP_DB=WormBase Gene ID /WP=CE24825 /GEN=dyc-1 /TR=Q93325 /GB=CAB01738.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 54      6grp_cgc > 31      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 853
1 2 3 4 range
A 1022
(3)
P 		376.7
(-1.6)
A 		318.6
(-2)
A 		176.3
(-3)
A 		846
B 823.8
(3)
P 		452.7
(-0.5)
A 		345.3
(-1.6)
A 		196.2
(-3)
A 		628
C 749.2
(3)
P 		413.9
(-0.5)
A 		347.4
(-1.2)
A 		168.9
(-3)
A 		580
avr 865
(3) 		414.4
(-0.9) 		337.1
(-1.6) 		180.5
(-3) 		685

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 555
1 2 3 4 5 6 range
A 682.1
(3)
M 		541.9
(1.3)
P 		300
(-1.5)
A 		300.5
(-1.5)
A 		267.7
(-1.9)
A 		175.3
(-3)
A 		507
B 541.9
(3)
P 		495
(2.3)
P 		344.7
(-0.1)
P 		322
(-0.5)
A 		177.9
(-2.7)
A 		161.9
(-3)
A 		380
C 527.7
(3)
P 		529.2
(3)
P 		405.1
(1.1)
A 		311.4
(-0.3)
A 		173.5
(-2.3)
A 		127.6
(-3)
A 		402
avr 583.9
(3) 		522
(2.1) 		349.9
(-0.3) 		311.3
(-0.8) 		206.4
(-2.3) 		154.9
(-3) 		429
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 372.1
(3)
P 		81.8
(-2)
A 		83.3
(-2)
A 		25.8
(-3)
A 		346
B 262.7
(3)
P 		111.8
(-1.1)
A 		80
(-2)
A 		41.8
(-3)
A 		221
C 248
(3)
P 		119
(-0.5)
A 		121.1
(-0.5)
A 		28.5
(-3)
A 		220
avr 294.3
(3) 		104.2
(-1.3) 		94.8
(-1.6) 		32
(-3) 		262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 125.7
(0.3)
M 		192.7
(3)
P 		65.3
(-2.1)
A 		76.2
(-1.7)
A 		80.8
(-1.5)
A 		42.7
(-3)
A 		150
B 188.5
(3)
P 		164.8
(1.9)
P 		83.7
(-1.9)
P 		85.3
(-1.8)
A 		72.3
(-2.4)
A 		60.4
(-3)
A 		128
C 195.6
(3)
P 		161.5
(1.7)
P 		103.1
(-0.6)
A 		62.6
(-2.2)
A 		56.2
(-2.5)
A 		42.7
(-3)
A 		153
avr 169.9
(2.9) 		173
(3) 		84
(-1.3) 		74.7
(-1.7) 		69.8
(-2) 		48.6
(-3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187957_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17396
Sequence Type Exemplar sequence
Representative Public ID C33G3.1 NCBI
Target Description C33G3.1 /REP_DB=WormBase Gene ID /WP=CE24825 /GEN=dyc-1 /TR=Q93325 /GB=CAB01738.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029268(11), NM_171796(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029268 NCBI Caenorhabditis elegans DYstrophin-like phenotype and CAPON related family member (dyc-1) (dyc-1) mRNA, complete cds. 11/11 None
NM_171796 NCBI Caenorhabditis elegans DYstrophin-like phenotype and CAPON related family member (dyc-1) (dyc-1) mRNA, complete cds. 11/11 A 
C33G3.1b.2 ENSEMBL cdna:known chromosome:CEL140:X:14049455:14063775:1 gene:C33G3.1 11/11 A 
C33G3.1b.1 ENSEMBL cdna:known chromosome:CEL140:X:14049556:14063795:1 gene:C33G3.1 11/11 A 
C33G3.1a ENSEMBL cdna:known chromosome:CEL140:X:14055205:14063272:1 gene:C33G3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041088 7/11 Cross Hyb Matching Probes None
SNAP00000041079 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14055204-14063272(+) 100.0 100.0
Public Domain and Genome References
Ensembl C33G3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD30431 Hypothetical protein C33G3.1b [Caenorhabditis elegans] emb|CAD30430.1| Hypothetical protein C33G3.1b [Caenorhabditis elegans] ref|NP_001024439.1| DYstrophin-like phenotype and CAPON related family member (dyc-1) [Caenorhabditis elegans] sp|Q8STF6|DYC1_CAEEL Dystrophin-like protein 1 (Dyb-1 binding and CAPON-related protein) 0.0
blast CAB01738 Hypothetical protein C33G3.1a [Caenorhabditis elegans] ref|NP_741925.2| DYstrophin-like phenotype and CAPON related family member (dyc-1) [Caenorhabditis elegans] emb|CAB44432.1| DYC-1 protein [Caenorhabditis elegans] 0.0
blast CAE63044 Hypothetical protein CBG07311 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 6.3E-39
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 7.0E-6
Sequence
Target Sequence 
>C. ELEGANS:187957_AT
atgacagtccacgatcaatacctccgagtccgccttcgaaagctagaaatacaacgatcg
actctttattcaaacctcaagatgatcctcctacaattgctgatcgagaacctcaacaac
tacctcctcaaccatcacagcaaaatcaaaaaaagaatacggcggtgaatttgttaatgc
ctacaatgccagcaagctcatcattggttacagcaatgtatcctccaatgaggcaacctg
ctgttccagttaacaagatccaaccgaaagtagatgtattccgcaagaagacgctgaaaa
cgctatcaatggacattgccgaagaaccggaacccagtgaaatggatcccaacagaaaca
accttccaagttctacaaatagttcgatgaagcggcgaggcttcttgccgccaccaaata
cagatgtggagattaaggaaattgaagattacatcaaccggaatgtggatcgctccaagc
tacccgagacttcattgttaacaaggctcactcgacaggcacagggcgataactcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACAGTCCACGATCAATACCTCC 607 43 1826 Antisense
GAGTCCGCCTTCGAAAGCTAGAAAT 371 401 1851 Antisense
GATCGACTCTTTATTCAAACCTCAA 322 415 1881 Antisense
CAAACCTCAAGATGATCCTCCTACA 473 191 1896 Antisense
ATGCCTACAATGCCAGCAAGCTCAT 588 41 2002 Antisense
AATGAGGCAACCTGCTGTTCCAGTT 532 163 2052 Antisense
TGAAGCGGCGAGGCTTCTTGCCGCC 572 573 2213 Antisense
GGAATGTGGATCGCTCCAAGCTACC 609 529 2285 Antisense
AGCTACCCGAGACTTCATTGTTAAC 266 79 2303 Antisense
TAACAAGGCTCACTCGACAGGCACA 21 641 2324 Antisense
GACAGGCACAGGGCGATAACTCCTT 321 369 2339 Antisense
Sequence Source Affymetrix Proprietary Database