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[187952_at]

Description R119.6 /REP_DB=WormBase Gene ID /WP=CE18160 /GEN=taf-5 /TR=O61707 /GB=AAC16427.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 59      4grp_highest_8_8 > 37      4grp_high_8_8 > 03      6grp_highest_nonorm > 90      6grp_total > 39      4grp_total > 06      6grp_cgc > 19      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 175.6
(0.1)
P 		116.5
(-2.9)
P 		114.9
(-3)
P 		234.1
(3)
P 		119
B 167.7
(-1.5)
P 		145.9
(-3)
P 		159.1
(-2.1)
P 		232.2
(3)
P 		86
C 211.4
(3)
P 		119.5
(-3)
P 		168.7
(0.2)
P 		203.6
(2.5)
P 		92
avr 184.9
(0.6) 		127.3
(-3) 		147.6
(-1.7) 		223.3
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 83.1
(-3)
P 		143.3
(3)
P 		100.8
(-1.2)
P 		124.3
(1.1)
P 		124.9
(1.2)
P 		138.6
(2.5)
P 		60
B 186.3
(3)
P 		180.9
(2.6)
P 		123.8
(-1.5)
P 		102.4
(-3)
P 		153.9
(0.7)
P 		148.1
(0.3)
P 		84
C 159.2
(1.1)
P 		139.9
(-0.2)
P 		107
(-2.4)
P 		97.1
(-3)
P 		188.7
(3)
P 		145
(0.1)
P 		92
avr 142.9
(1.4) 		154.7
(2.9) 		110.5
(-2.7) 		107.9
(-3) 		155.8
(3) 		143.9
(1.5) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 63.9
(3)
P 		25.3
(-3)
P 		30
(-2.3)
P 		34.3
(-1.6)
P 		39
B 53.5
(3)
P 		36
(-3)
P 		36.9
(-2.7)
P 		49.5
(1.6)
P 		18
C 70
(3)
P 		34.4
(-3)
P 		58.8
(1.1)
P 		34.3
(-3)
P 		36
avr 62.5
(3) 		31.9
(-3) 		41.9
(-1) 		39.4
(-1.5) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 15.3
(-3)
P 		51
(3)
P 		21.9
(-1.9)
P 		31.5
(-0.3)
P 		37.7
(0.8)
P 		33.7
(0.1)
P 		36
B 64.8
(3)
P 		60.2
(2.3)
P 		30.1
(-2.5)
P 		27.1
(-3)
P 		62.5
(2.6)
P 		55.2
(1.5)
P 		38
C 59
(2.7)
P 		42.7
(0.4)
P 		27.2
(-1.9)
P 		19.5
(-3)
P 		61
(3)
P 		48.5
(1.2)
P 		42
avr 46.4
(1.4) 		51.3
(2.5) 		26.4
(-2.9) 		26
(-3) 		53.7
(3) 		45.8
(1.3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187952_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2547
Sequence Type Exemplar sequence
Representative Public ID R119.6 NCBI
Target Description R119.6 /REP_DB=WormBase Gene ID /WP=CE18160 /GEN=taf-5 /TR=O61707 /GB=AAC16427.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058327(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058327 NCBI Caenorhabditis elegans TAF (TBP-associated transcription factor) family member (taf-4) (taf-4) mRNA, complete cds. 11/11 A 
SNAP00000007614 ENSEMBL cdna:SNAP chromosome:CEL140:I:382836:388153:1 11/11 None
GENEFINDER00000007616 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:382836:388525:1 11/11 None
R119.6 ENSEMBL cdna:known chromosome:CEL140:I:382518:388504:1 gene:R119.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:382517-388437(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol taf-4
Ensembl R119.6
Entrez Gene 171630 Entrez gene
SwissProt O61707 EMBL-EBI
WormBase CE18160 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC16427 Taf (tbp-associated transcription factor) family protein 4 [Caenorhabditis elegans] ref|NP_490728.1| TAF (TBP-associated transcription factor) family member (taf-4) [Caenorhabditis elegans] 0.0
blast AAC16427 Taf (tbp-associated transcription factor) family protein 4 [Caenorhabditis elegans] ref|NP_490728.1| TAF (TBP-associated transcription factor) family member (taf-4) [Caenorhabditis elegans] 1.0E-173
blast AAC16427 Taf (tbp-associated transcription factor) family protein 4 [Caenorhabditis elegans] ref|NP_490728.1| TAF (TBP-associated transcription factor) family member (taf-4) [Caenorhabditis elegans] 1.0E-164
blast CAE74386 Hypothetical protein CBG22116 [Caenorhabditis briggsae] 1.0E-56
blast CAE74548 Hypothetical protein CBG22305 [Caenorhabditis briggsae] 1.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR007900 EMBL-EBI Transcription initiation factor TFIID component TAF4 1.3E-16
Pfam IPR007900 EMBL-EBI Transcription initiation factor TFIID component TAF4 1.3E-16
Pfam IPR007900 EMBL-EBI Transcription initiation factor TFIID component TAF4 1.3E-16
Sequence
Target Sequence 
>C. ELEGANS:187952_AT
gccacgaggcaatatcctgaaggatcgctgaaatcgtcgattctgaagccggatgaggtg
ctgaataggatcacgaaacgaatgatgtcatcgtgttcggtggaagaggaggcgcttgtc
gcgatttcagatgctgttgagtcgcatttaagggaacttattacactgatggccggagtt
gcagaacatcgggtggagagtttgagaattccggagaactacgtggcaattgatgacgtc
aaacggcaacttcgattccttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACGAGGCAATATCCTGAAGGAT 668 279 1033 Antisense
TCCTGAAGGATCGCTGAAATCGTCG 259 589 1047 Antisense
GAAATCGTCGATTCTGAAGCCGGAT 243 363 1062 Antisense
GAATGATGTCATCGTGTTCGGTGGA 11 333 1112 Antisense
CGGTGGAAGAGGAGGCGCTTGTCGC 79 241 1130 Antisense
GCGCTTGTCGCGATTTCAGATGCTG 24 289 1144 Antisense
GCTGTTGAGTCGCATTTAAGGGAAC 683 295 1165 Antisense
GGAACTTATTACACTGATGGCCGGA 326 525 1185 Antisense
GGCCGGAGTTGCAGAACATCGGGTG 137 541 1203 Antisense
GAATTCCGGAGAACTACGTGGCAAT 4 325 1238 Antisense
GTCAAACGGCAACTTCGATTCCTTG 167 463 1270 Antisense
Sequence Source Affymetrix Proprietary Database