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[187947_at]

Description T01H8.4 /REP_DB=WormBase Gene ID /WP=CE13020 /GEN=gon-2 /TR=Q93969 /GB=CAB02299.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 60      4grp_high_8_8 > 28      6grp_total > 44      4grp_total > 35      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 96.2
(-1.2)
P 		137.9
(3)
P 		77.8
(-3)
P 		138.4
(3)
P 		61
B 103.3
(-3)
P 		199.5
(3)
P 		127.3
(-1.5)
P 		127.5
(-1.5)
A 		96
C 130.2
(1.3)
P 		109.5
(-0.9)
P 		90.2
(-3)
P 		146.5
(3)
P 		56
avr 109.9
(-1.6) 		149
(3) 		98.4
(-3) 		137.5
(1.6) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 116.1
(3)
P 		47.4
(-3)
P 		79
(-0.2)
P 		77.8
(-0.3)
M 		65.5
(-1.4)
P 		83.6
(0.2)
P 		69
B 79.7
(-1.7)
P 		98.5
(-0.4)
P 		148.9
(3)
P 		122.8
(1.2)
P 		107.5
(0.2)
P 		60.6
(-3)
P 		88
C 59.1
(-1.2)
P 		104.3
(3)
P 		48.9
(-2.1)
P 		39.7
(-3)
A 		59.4
(-1.2)
P 		103.4
(2.9)
P 		65
avr 85
(0) 		83.4
(-0.6) 		92.3
(3) 		80.1
(-1.9) 		77.5
(-3) 		82.5
(-1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 35
(3)
P 		29.9
(0.9)
P 		20.3
(-3)
P 		20.3
(-3)
P 		15
B 32.9
(-1.5)
P 		49.3
(3)
P 		29.5
(-2.4)
P 		27.2
(-3)
A 		22
C 43.1
(3)
P 		31.5
(-0.8)
P 		31.4
(-0.8)
P 		24.7
(-3)
P 		18
avr 37
(3) 		36.9
(3) 		27.1
(-1.6) 		24.1
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 21.4
(3)
P 		16.9
(-3)
P 		17.2
(-2.6)
P 		19.7
(0.7)
M 		19.8
(0.9)
P 		20.4
(1.7)
P 		5
B 27.7
(-1.5)
P 		32.8
(-0.1)
P 		36.1
(0.8)
P 		32.5
(-0.2)
P 		43.7
(3)
P 		22.6
(-3)
P 		21
C 21.9
(0.1)
P 		31.8
(2.4)
P 		12.5
(-2)
P 		8
(-3)
A 		19.2
(-0.5)
P 		34.6
(3)
P 		27
avr 23.7
(-0.1) 		27.2
(2.7) 		21.9
(-1.6) 		20.1
(-3) 		27.6
(3) 		25.9
(1.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187947_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.704
Sequence Type Exemplar sequence
Representative Public ID T01H8.4 NCBI
Target Description T01H8.4 /REP_DB=WormBase Gene ID /WP=CE13020 /GEN=gon-2 /TR=Q93969 /GB=CAB02299.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) T01H8.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T01H8.4 T01H8.4 /REP_DB=WormBase Gene ID /WP=CE13020 /GEN=gon-2 /TR=Q93969 /GB=CAB02299.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010903 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8577887-8579013(-) 45.14 100.0
Sequence
Target Sequence 
>C. ELEGANS:187947_AT
agaatgatgagtctctctcctctatctatactctctcgccttcacagctccatgtccagc
gcccaaaagccctcaaccgtccttttcgtgccacgcccccaagcattaattttcatttca
ttcattcctctcgtttgctcccacttcaccatttaagtcgtctaattacttacttaggat
acttggtcgattcgttcttcgcttacggcacggaagacagctttccaagcttttcggccc
tttgcttgtgtggaccatggggtgatgaagcatcgcacatatccgtcgtggtgatttcct
tcgacagagagtttggaccatcttatcggaggccttccaacatgtcttttccgatttctg
gaataccgccatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATGATGAGTCTCTCTCCTCTAT 415 75 38 Antisense
CACGCCCCCAAGCATTAATTTTCAT 690 195 129 Antisense
CTCCCACTTCACCATTTAAGTCGTC 415 233 175 Antisense
TACTTGGTCGATTCGTTCTTCGCTT 55 645 217 Antisense
AGACAGCTTTCCAAGCTTTTCGGCC 619 71 252 Antisense
GCCCTTTGCTTGTGTGGACCATGGG 298 285 274 Antisense
CATCGCACATATCCGTCGTGGTGAT 559 211 308 Antisense
CGTGGTGATTTCCTTCGACAGAGAG 433 245 324 Antisense
GTTTGGACCATCTTATCGGAGGCCT 471 451 348 Antisense
TCCAACATGTCTTTTCCGATTTCTG 579 587 373 Antisense
CCGATTTCTGGAATACCGCCATCAG 479 263 388 Antisense
Sequence Source Affymetrix Proprietary Database