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[187943_at]

Description ZC504.5 /REP_DB=WormBase Gene ID /WP=CE26844 /GEN=gur-3 /TR=O18280 /GB=CAA90343.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 13      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 41.7
(-0.8)
A 		33.9
(-1.4)
A 		12.1
(-3)
A 		94.5
(3)
A 		82
B 44
(0.8)
A 		34.7
(-0.7)
A 		20.5
(-3)
A 		57.4
(3)
A 		37
C 45.2
(2.1)
A 		1
(-3)
A 		34.1
(0.8)
A 		52.8
(3)
A 		52
avr 43.6
(-0.2) 		23.2
(-2.9) 		22.2
(-3) 		68.2
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 87.4
(3)
A 		34
(-0.9)
A 		36.4
(-0.7)
A 		4.8
(-3)
A 		27.6
(-1.3)
A 		5.9
(-2.9)
A 		83
B 36.5
(3)
A 		31.1
(1.9)
A 		7.5
(-3)
A 		16.4
(-1.2)
A 		10.8
(-2.3)
A 		22.3
(0.1)
A 		29
C 23.3
(-1.8)
A 		27.2
(-1.1)
A 		49.5
(3)
A 		23.3
(-1.8)
A 		16.5
(-3)
A 		33.8
(0.1)
A 		33
avr 49.1
(3) 		30.8
(-0.2) 		31.1
(-0.1) 		14.8
(-3) 		18.3
(-2.4) 		20.7
(-2) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.2
(3)
A 		7.4
(-0.9)
A 		3.2
(-3)
A 		13.8
(2.3)
A 		12
B 14
(3)
A 		8.6
(-0.5)
A 		4.7
(-3)
A 		12.2
(1.8)
A 		9
C 15
(3)
A 		0.3
(-3)
A 		11.9
(1.7)
A 		8.9
(0.5)
A 		15
avr 14.7
(3) 		5.4
(-3) 		6.6
(-2.2) 		11.6
(1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 16.1
(3)
A 		12.1
(1.4)
A 		7.9
(-0.3)
A 		1.2
(-3)
A 		8.3
(-0.1)
A 		1.4
(-2.9)
A 		15
B 12.7
(3)
A 		10.3
(1.7)
A 		1.8
(-3)
A 		4.4
(-1.6)
A 		4.4
(-1.6)
A 		8.3
(0.6)
A 		11
C 8.6
(-0)
A 		8.3
(-0.3)
A 		12.6
(3)
A 		4.7
(-3)
A 		5.3
(-2.5)
A 		11.3
(2)
A 		8
avr 12.5
(3) 		10.2
(1.5) 		7.4
(-0.4) 		3.4
(-3) 		6
(-1.3) 		7
(-0.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187943_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16507
Sequence Type Exemplar sequence
Representative Public ID ZC504.5 NCBI
Target Description ZC504.5 /REP_DB=WormBase Gene ID /WP=CE26844 /GEN=gur-3 /TR=O18280 /GB=CAA90343.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077342
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000031669 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10402582:10403969:-1 None
NM_077342 NCBI Caenorhabditis elegans GUstatory Receptor family member (gur-3) (gur-3) mRNA, complete cds. A 
SNAP00000031660 ENSEMBL cdna:SNAP chromosome:CEL140:X:10402582:10403451:-1 None
ZC504.5 ENSEMBL cdna:known chromosome:CEL140:X:10402453:10406231:-1 gene:ZC504.5 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10402581-10404011(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gur-3
Ensembl ZC504.5
Entrez Gene 181245 Entrez gene
SwissProt O18280 EMBL-EBI
WormBase CE30223 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7608 sensory perception of smell inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4984 olfactory receptor activity inferred from electronic annotation QuickGO AmiGO
5549 odorant binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90343 Hypothetical protein ZC504.5 [Caenorhabditis elegans] ref|NP_509743.2| GUstatory Receptor family member (gur-3) [Caenorhabditis elegans] 0.0
blast AAK70489 putative chemoreceptor GUR-3 [Caenorhabditis elegans] 0.0
blast CAE70575 Hypothetical protein CBG17231 [Caenorhabditis briggsae] 0.0
blast CAA90343 Hypothetical protein ZC504.5 [Caenorhabditis elegans] ref|NP_509743.2| GUstatory Receptor family member (gur-3) [Caenorhabditis elegans] 1.0E-142
blast AAK70489 putative chemoreceptor GUR-3 [Caenorhabditis elegans] 1.0E-142
blast CAE70575 Hypothetical protein CBG17231 [Caenorhabditis briggsae] 1.0E-140
blast CAA90343 Hypothetical protein ZC504.5 [Caenorhabditis elegans] ref|NP_509743.2| GUstatory Receptor family member (gur-3) [Caenorhabditis elegans] 8.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509743.2 7 74-96,116-138,173-192,212-234,291-313,328-350,406-424
ZC504.5 7 74-96,116-138,173-192,212-234,291-313,328-350,406-424
SNAP00000031660 1 71-89
GENEFINDER00000031669 4 20-42,98-120,135-157,213-231
Sequence
Target Sequence 
>C. ELEGANS:187943_AT
ttcactgttttatacctacggctgttgtattccgctgacctgtctgttgggctacattgc
ttttcgaaatggaattcaggctgatatggcggaaactttttctgtggcaatatggctcac
taatactatgttagcattgatgcttttctcgattccagcttttatgattgctgaagaggg
cgacaaacttctaaccgcttctttcaaaatgtatcacgaaactctatgtgaggaacgtga
tcttctagttttggtgtgttcgttatctcaaaaaaaaatcgatcaattctactttcagtc
tcaaatgagttttctttcgtttcaaatgcatgctacaaagcttactctcaccgccgggaa
tttcttcatgatgaatcgcaaaattatgatcagtgtacgtttaaaggcgtgcagctggtt
tttattgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACTGTTTTATACCTACGGCTGT 551 683 354 Antisense
CTACGGCTGTTGTATTCCGCTGACC 638 225 369 Antisense
GTTGGGCTACATTGCTTTTCGAAAT 498 437 399 Antisense
ATGGCGGAAACTTTTTCTGTGGCAA 410 53 439 Antisense
TAGCATTGATGCTTTTCTCGATTCC 578 651 485 Antisense
TTCTCGATTCCAGCTTTTATGATTG 315 693 499 Antisense
GAGGGCGACAAACTTCTAACCGCTT 291 401 529 Antisense
ACTTCTAACCGCTTCTTTCAAAATG 131 103 540 Antisense
GATCTTCTAGTTTTGGTGTGTTCGT 287 415 592 Antisense
ATCGATCAATTCTACTTTCAGTCTC 233 37 631 Antisense
GGCGTGCAGCTGGTTTTTATTGTTC 558 541 759 Antisense
Sequence Source Affymetrix Proprietary Database