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[187942_at]

Description Y54F10AR.B_rc /REP_DB=WormBase Gene ID /WP=CE25442 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF59560.1
Cluster 6grp_total > 92      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 92.2
(-0.9)
A 		50.5
(-3)
A 		69
(-2.1)
A 		169.7
(3)
P 		119
B 37.7
(-3)
A 		132.3
(3)
A 		37.2
(-3)
A 		83.1
(-0.1)
A 		95
C 64.8
(-0.6)
P 		30.4
(-3)
A 		73.1
(-0)
P 		116.7
(3)
A 		86
avr 64.9
(-2.5) 		71.1
(-1.9) 		59.8
(-3) 		123.2
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 53.5
(0.5)
A 		75.5
(2.7)
A 		54.7
(0.6)
A 		19.8
(-3)
A 		78.3
(3)
A 		39.4
(-1)
A 		59
B 66.2
(-3)
A 		72.2
(-1.2)
A 		78.4
(0.6)
A 		84
(2.3)
A 		72.1
(-1.2)
P 		86.3
(3)
A 		20
C 83.9
(1.2)
A 		99.4
(2.3)
P 		22.6
(-3)
A 		110
(3)
A 		93.8
(1.9)
A 		32.4
(-2.3)
A 		87
avr 67.9
(0.1) 		82.4
(3) 		51.9
(-3) 		71.3
(0.8) 		81.4
(2.8) 		52.7
(-2.8) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 33.6
(3)
A 		11
(-3)
A 		18
(-1.1)
A 		24.8
(0.7)
P 		23
B 12
(-2.2)
A 		32.7
(3)
A 		8.6
(-3)
A 		17.7
(-0.7)
A 		24
C 21.5
(1.6)
P 		8.7
(-3)
A 		25.5
(3)
P 		19.7
(0.9)
A 		17
avr 22.4
(3) 		17.5
(-2.9) 		17.4
(-3) 		20.7
(1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 9.9
(-1.7)
A 		26.9
(3)
A 		11.9
(-1.1)
A 		5
(-3)
A 		23.6
(2.1)
A 		9.6
(-1.7)
A 		22
B 23
(-1.2)
A 		24
(-0.7)
A 		19
(-3)
A 		22.2
(-1.5)
A 		29.3
(1.7)
P 		32.2
(3)
A 		13
C 31.1
(3)
A 		30.3
(2.8)
P 		5.8
(-3)
A 		22.1
(0.9)
A 		30.3
(2.8)
A 		10.9
(-1.8)
A 		25
avr 21.3
(0.5) 		27.1
(2.8) 		12.2
(-3) 		16.4
(-1.4) 		27.7
(3) 		17.6
(-0.9) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187942_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28183
Sequence Type Exemplar sequence
Representative Public ID Y54F10AR.B NCBI
Target Description Y54F10AR.B_rc /REP_DB=WormBase Gene ID /WP=CE25442 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF59560.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y54F10AR.B
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y54F10AR.B Y54F10AR.B_rc /REP_DB=WormBase Gene ID /WP=CE25442 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAF59560.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065180 10/11 Negative Strand Matching Probes A 
GENEFINDER00000000508 11/11 Negative Strand Matching Probes None
Y54F10AR.2 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2567456-2570574(+) 96.26 100.0
Sequence
Target Sequence 
>C. ELEGANS:187942_AT
tgacgatatagccgttgtcgccgagcaggtcatcttgtgttatattcagcgcctccttct
gaattttactgagcttatgggcggccgagcgatgaaattgcagcgtttcgtgtccgccga
gtgtgaattccgccaaatttgaaaagtcttcctcccgaatagctcgaagaacttcgaaaa
aaaccgaatcacagtgagcgaggaactcctttttctcgtcttggaggccgattccacgga
caaatgcgtttctcaatttgtaaaaatttctaaatttccgaaatttttggccaaaaattt
caaaaatttcaaaattgttcaaaaaaaaatccggaattcccaatttctcaaaaattccga
tcgtggcgagacccgagaaggtacagtaccatatatccctgcacaaaagccttcgcctgc
tcgatttttccctgtggggactgcaaaatgagacgtggacagccctgatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGATATAGCCGTTGTCGCCGAG 3 571 366 Antisense
GCCGAGCAGGTCATCTTGTGTTATA 330 285 385 Antisense
TTCAGCGCCTCCTTCTGAATTTTAC 197 685 410 Antisense
TTTACTGAGCTTATGGGCGGCCGAG 255 673 430 Antisense
TTTCGTGTCCGCCGAGTGTGAATTC 136 671 471 Antisense
GTCTTCCTCCCGAATAGCTCGAAGA 583 467 511 Antisense
GAGCGAGGAACTCCTTTTTCTCGTC 254 385 561 Antisense
GGAGGCCGATTCCACGGACAAATGC 172 513 588 Antisense
GGTACAGTACCATATATCCCTGCAC 20 505 745 Antisense
GCTCGATTTTTCCCTGTGGGGACTG 183 297 784 Antisense
AATGAGACGTGGACAGCCCTGATGG 537 163 812 Antisense
Sequence Source Affymetrix Proprietary Database