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[187940_s_at]

Description ZC262.3 /REP_DB=WormBase Gene ID /WP=CE27345 /GB=AAK29995.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=N-CAM IG domain
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 45      4grp_highest_8_8 > 35      4grp_high_8_8 > 48      6grp_highest_nonorm > 76      6grp_total > 35      4grp_total > 63      6grp_highest_sub > 01_02_03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 573
1 2 3 4 range
A 1252.6
(3)
P 		712.5
(-3)
P 		969.6
(-0.1)
P 		810.9
(-1.9)
P 		540
B 1064.6
(3)
P 		863.9
(-3)
P 		931.6
(-1)
P 		880.8
(-2.5)
P 		201
C 1064.9
(3)
P 		700.1
(-2.7)
P 		855.7
(-0.3)
P 		679.9
(-3)
P 		385
avr 1127.4
(3) 		758.8
(-3) 		919
(-0.4) 		790.5
(-2.5) 		369

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 640
1 2 3 4 5 6 range
A 1022.5
(-2.6)
P 		1410.8
(3)
P 		1140.5
(-0.9)
P 		1269.6
(0.9)
P 		998.3
(-3)
P 		1317
(1.6)
P 		413
B 1232.9
(1.5)
P 		1297.4
(2.6)
P 		1324.9
(3)
P 		1244.6
(1.7)
P 		958.2
(-3)
P 		1242
(1.6)
P 		367
C 1597.8
(3)
P 		1255.1
(-0.6)
P 		1539.2
(2.4)
P 		1104.9
(-2.2)
P 		1025.2
(-3)
P 		1095
(-2.3)
P 		573
avr 1284.4
(2.1) 		1321.1
(2.8) 		1334.9
(3) 		1206.4
(0.7) 		993.9
(-3) 		1218
(0.9) 		341
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 456.1
(3)
P 		154.7
(-2.4)
P 		253.5
(-0.6)
P 		118.7
(-3)
P 		337
B 339.5
(3)
P 		213.4
(-2)
P 		215.9
(-1.9)
P 		187.7
(-3)
P 		152
C 352.5
(3)
P 		201.3
(-0.8)
P 		298.2
(1.6)
P 		114.6
(-3)
P 		238
avr 382.7
(3) 		189.8
(-1.8) 		255.9
(-0.1) 		140.3
(-3) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 404
1 2 3 4 5 6 range
A 188.5
(-3)
P 		501.8
(3)
P 		248.4
(-1.9)
P 		322
(-0.4)
P 		301.2
(-0.8)
P 		320.6
(-0.5)
P 		313
B 429
(1.6)
P 		431.9
(1.7)
P 		321.7
(-3)
P 		329.7
(-2.7)
P 		389.3
(-0.1)
P 		463.1
(3)
P 		141
C 592.2
(3)
P 		383
(-0.4)
P 		391.8
(-0.2)
P 		222.2
(-3)
P 		331.7
(-1.2)
P 		366.6
(-0.7)
P 		370
avr 403.2
(1.5) 		438.9
(3) 		320.6
(-1.8) 		291.3
(-3) 		340.7
(-1) 		383.4
(0.7) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187940_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7941
Sequence Type Exemplar sequence
Representative Public ID ZC262.3 NCBI
Target Description ZC262.3 /REP_DB=WormBase Gene ID /WP=CE27345 /GB=AAK29995.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=N-CAM IG domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066433 NCBI Caenorhabditis elegans ZC262.3a (ZC262.3) mRNA, complete cds. 11/11 None
SNAP00000039712 ENSEMBL cdna:SNAP chromosome:CEL140:III:8326822:8331805:-1 11/11 None
GENEFINDER00000039730 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8326822:8330825:-1 11/11 None
ZC262.3a ENSEMBL cdna:known chromosome:CEL140:III:8326495:8330862:-1 gene:ZC262.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066432 1/11 Cross Hyb Matching Probes None
NM_066434 1/11 Cross Hyb Matching Probes None
ZC262.3b 1/11 Cross Hyb Matching Probes A 
ZC262.8.2 1/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176175 2 1 NM_066433 187940_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8326817-8331250(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZC262.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29995 Hypothetical protein ZC262.3a [Caenorhabditis elegans] ref|NP_498834.1| ZC262.3a [Caenorhabditis elegans] sp|P34595|YOD3_CAEEL Hypothetical protein ZC262.3 in chromosome III 0.0
blast AAL11102 Hypothetical protein ZC262.3b [Caenorhabditis elegans] ref|NP_498833.1| ZC262.3b [Caenorhabditis elegans] 0.0
blast CAE70161 Hypothetical protein CBG16628 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.3.ARID domain All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain 6.40000009536743
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.33
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.061
Pfam IPR001648 EMBL-EBI Ribosomal protein S18 0.0011
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.9E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.16
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.33
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.061
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.9E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498834.1 1 496-518
ZC262.3a 1 496-518
SNAP00000039712 1 628-650
GENEFINDER00000039730 1 496-518
Sequence
Target Sequence 
>C. ELEGANS:187940_S_AT
gcacttcgtgtatcgtatgcatcacaacaagagaaatttcaaaattataaagcagctcaa
gtggatgctgtacattcacatttggatgcaatgagagatggatataataatcaattgggt
agagtcagagaatatggatcaaaacgtgcagaacaattatgggagagctatgagcgacag
gtgaatcgcatgcgaaccttcagtctacaacatcgtctaaaaatgatgcgccagtacaaa
gtgaagcaacgttatgttaataaattactcgaatcactgcaagcaacatcaccagaagtt
caattggagaatgaagaaaaagtacgtgctgctctagagattcctgatgatttggcaact
attgatggttcaatggacactccttctcgcctctcgcgtagttcatcattccatagtctt
cctgaatatgttattgatgaacaaggaaacgtacgaccgggaattattccaacaaatgcg
ccttccattagattcactaccaaaccaacaacatcttcaatatcaaacgaggcaagtacc
tcttctccgagctcatcaggagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTTCGTGTATCGTATGCATCAC 704 315 1987 Antisense
GGTGAATCGCATGCGAACCTTCAGT 656 499 2166 Antisense
AACCTTCAGTCTACAACATCGTCTA 480 147 2181 Antisense
ATTACTCGAATCACTGCAAGCAACA 178 13 2250 Antisense
GTACGTGCTGCTCTAGAGATTCCTG 118 459 2308 Antisense
GATGGTTCAATGGACACTCCTTCTC 9 409 2350 Antisense
GTAGTTCATCATTCCATAGTCTTCC 210 457 2384 Antisense
TATTCCAACAAATGCGCCTTCCATT 88 665 2451 Antisense
CGCCTTCCATTAGATTCACTACCAA 686 257 2465 Antisense
AACGAGGCAAGTACCTCTTCTCCGA 453 145 2512 Antisense
CTCTTCTCCGAGCTCATCAGGAGCT 700 229 2526 Antisense
Sequence Source Affymetrix Proprietary Database