[Home] | [Total List]

[187936_s_at]

Description K07E12.1 /REP_DB=WormBase Gene ID /WP=CE00713 /TR=Q09165 /GB=AAA50715.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=CAM
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 20      6grp_total > 15      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1689
1 2 3 4 range
A 1871.7
(3)
P 		922.7
(-0.5)
P 		580.4
(-1.8)
P 		253.3
(-3)
P 		1618
B 1820.3
(3)
P 		960.2
(-0.2)
P 		698.6
(-1.1)
P 		182.9
(-3)
P 		1637
C 1663.7
(3)
P 		856
(-0.3)
P 		636
(-1.2)
P 		186.1
(-3)
P 		1478
avr 1785.2
(3) 		913
(-0.3) 		638.3
(-1.4) 		207.4
(-3) 		1578

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1317
1 2 3 4 5 6 range
A 1752.4
(3)
P 		1718.9
(2.8)
P 		571.6
(-3)
P 		768.9
(-2)
P 		721.5
(-2.2)
P 		630.9
(-2.7)
P 		1181
B 1785.7
(3)
P 		1180.6
(0.2)
P 		784.4
(-1.6)
P 		838.5
(-1.3)
P 		468.8
(-3)
P 		641
(-2.2)
P 		1317
C 1540.7
(3)
P 		1220.6
(0.9)
P 		1264.6
(1.2)
P 		759
(-2)
P 		680.5
(-2.6)
P 		610.9
(-3)
P 		930
avr 1692.9
(3) 		1373.4
(1.2) 		873.5
(-1.6) 		788.8
(-2.1) 		623.6
(-3) 		627.6
(-3) 		1069
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 650
1 2 3 4 range
A 681.5
(3)
P 		200.3
(-1.5)
P 		151.7
(-1.9)
P 		37.1
(-3)
P 		644
B 580.5
(3)
P 		237.1
(-0.8)
P 		161.9
(-1.6)
P 		39
(-3)
P 		542
C 550.7
(3)
P 		246.1
(-0.5)
P 		221.7
(-0.8)
P 		31.4
(-3)
P 		519
avr 604.2
(3) 		227.8
(-1) 		178.4
(-1.5) 		35.8
(-3) 		568

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 497
1 2 3 4 5 6 range
A 323
(-0.6)
P 		611.3
(3)
P 		124.5
(-3)
P 		195
(-2.1)
P 		217.7
(-1.9)
P 		153.6
(-2.6)
P 		487
B 621.3
(3)
P 		393
(-0.2)
P 		190.5
(-3)
P 		222.1
(-2.6)
P 		190.5
(-3)
P 		239
(-2.3)
P 		431
C 571.1
(3)
P 		372.4
(0.2)
P 		321.9
(-0.6)
P 		152.6
(-3)
P 		220.2
(-2)
P 		204.5
(-2.3)
P 		419
avr 505.1
(3) 		458.9
(2.1) 		212.3
(-2.6) 		189.9
(-3) 		209.5
(-2.6) 		199
(-2.8) 		315
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187936_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6239
Sequence Type Exemplar sequence
Representative Public ID K07E12.1 NCBI
Target Description K07E12.1 /REP_DB=WormBase Gene ID /WP=CE00713 /TR=Q09165 /GB=AAA50715.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=CAM
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171172(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171172 NCBI Caenorhabditis elegans K07E12.1a (CAM) mRNA, complete cds. 11/11 None
SNAP00000011558 ENSEMBL cdna:SNAP chromosome:CEL140:III:6769404:6794385:1 11/11 None
GENEFINDER00000011563 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6769444:6794385:1 11/11 None
K07E12.1a ENSEMBL cdna:known chromosome:CEL140:III:6746243:6794696:1 gene:K07E12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175951 2 1 NM_171172 187936_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6749069-6794384(+) 99.86 100.0
Public Domain and Genome References
Ensembl K07E12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50715 Hypothetical protein K07E12.1a [Caenorhabditis elegans] ref|NP_741200.1| K07E12.1a [Caenorhabditis elegans] gb|AAM78593.1| mesocentin [Caenorhabditis elegans] 0.0
blast AAM48546 Hypothetical protein K07E12.1b [Caenorhabditis elegans] ref|NP_001022668.1| K07E12.1b [Caenorhabditis elegans] 0.0
blast AAQ11020 mesocentin [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.3.1.Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 All alpha proteins; Cytochrome c; Cytochrome c; Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 4.0
scop a.139.1.Type I dockerin domain All alpha proteins; Type I dockerin domain; Type I dockerin domain; Type I dockerin domain 2.79999995231628
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.2E-5
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.3E-30
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.7E-33
Pfam IPR003961 EMBL-EBI Fibronectin, type III 3.8E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.2E-12
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.8E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 5.4E-12
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.1E-10
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.2E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.0E-11
Pfam IPR003961 EMBL-EBI Fibronectin, type III 5.6E-10
Pfam IPR003961 EMBL-EBI Fibronectin, type III 9.7E-11
Pfam IPR006209 EMBL-EBI EGF-like domain 1.1E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.13
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.2E-6
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.2E-5
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.3E-30
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.7E-33
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-5
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.2E-5
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.3E-30
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.7E-33
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-5
Sequence
Target Sequence 
>C. ELEGANS:187936_S_AT
gaagactacgttaagccgtctccatcgagctgcaactgtcaatgttctgaaggaaaagct
gttctccgagcaacttgtgaaatggttatcgatactaatcgcccaattgctacccttcca
ccagcaacagtcgacgagtgtccttgcaaagtcaaggctcacggaggacgttgtccaaag
ggttatattgcaaaggacggacagtgttatgatattgatgagtgtgaaaccaacaacgga
caatgctcagagggttgtgtgaatactccggggtcttactactgtgcttgccctcatgga
atgatgcgtgatcctttggatcctttcaattgtgtcaataccgccaactcattcgacaaa
atcgctgcccttcttgcaaattatcttgaagcaaacactaaaaattctggatcagaagta
acatcagaaaagtctgacggtggacgtgtcaactacaaagccacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACTACGTTAAGCCGTCTCCAT 617 337 38629 Antisense
TCTCCATCGAGCTGCAACTGTCAAT 554 609 38647 Antisense
AAAGCTGTTCTCCGAGCAACTTGTG 80 125 38683 Antisense
TCGATACTAATCGCCCAATTGCTAC 400 601 38717 Antisense
GCAACAGTCGACGAGTGTCCTTGCA 583 317 38752 Antisense
GTGAATACTCCGGGGTCTTACTACT 474 417 38887 Antisense
ACTGTGCTTGCCCTCATGGAATGAT 397 97 38909 Antisense
ATGCGTGATCCTTTGGATCCTTTCA 607 41 38932 Antisense
TCAATTGTGTCAATACCGCCAACTC 651 633 38954 Antisense
CGCTGCCCTTCTTGCAAATTATCTT 243 255 38991 Antisense
GGACGTGTCAACTACAAAGCCACAA 181 525 39070 Antisense
Sequence Source Affymetrix Proprietary Database