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[187932_at]

Description D2013.8 /REP_DB=WormBase Gene ID /WP=CE17621 /GEN=scp-1 /TR=Q18968 /GB=CAA87777.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 94      6grp_total > 66      4grp_total > 47      6grp_highest_sub > Da      6grp_cgc > 47      6grp_high1_sub > Da      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 688
1 2 3 4 range
A 869
(3)
P 		363.1
(-1.4)
P 		184.8
(-3)
P 		283.4
(-2.1)
P 		684
B 861.2
(3)
P 		180.6
(-3)
P 		185
(-3)
P 		329.4
(-1.7)
P 		681
C 785.2
(3)
P 		211
(-3)
P 		256.9
(-2.5)
P 		294.9
(-2.1)
P 		574
avr 838.5
(3) 		251.6
(-2.6) 		208.9
(-3) 		302.6
(-2.1) 		630

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 722
1 2 3 4 5 6 range
A 373.3
(-3)
P 		615.3
(-0.9)
P 		564.4
(-1.3)
P 		516.4
(-1.7)
P 		428.5
(-2.5)
P 		1056.2
(3)
P 		683
B 478.8
(-2.3)
P 		660.9
(-0.2)
P 		587.8
(-1)
P 		457.8
(-2.5)
P 		414.3
(-3)
P 		944.4
(3)
P 		530
C 345.9
(-3)
P 		702.6
(-0)
P 		587.6
(-1)
P 		512.4
(-1.6)
P 		388
(-2.7)
P 		1067.7
(3)
P 		722
avr 399.3
(-3) 		659.6
(-0.5) 		579.9
(-1.3) 		495.5
(-2.1) 		410.3
(-2.9) 		1022.8
(3) 		624
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 316.4
(3)
P 		78.8
(-2.2)
P 		48.3
(-2.9)
P 		41.5
(-3)
P 		275
B 274.6
(3)
P 		44.6
(-3)
P 		42.9
(-3)
P 		70.2
(-2.3)
P 		232
C 259.9
(3)
P 		60.7
(-2.7)
P 		89.5
(-1.9)
P 		49.7
(-3)
P 		210
avr 283.6
(3) 		61.4
(-2.8) 		60.2
(-2.8) 		53.8
(-3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 68.8
(-3)
P 		218.8
(1.8)
P 		122.9
(-1.3)
P 		131
(-1)
P 		129.3
(-1.1)
P 		257.2
(3)
P 		188
B 166.6
(-1.8)
P 		220
(-0.4)
P 		142.7
(-2.4)
P 		121.3
(-3)
P 		168.3
(-1.8)
P 		352.2
(3)
P 		231
C 128.2
(-2.4)
P 		214.4
(-0.4)
P 		149.6
(-1.9)
P 		103
(-3)
P 		125.5
(-2.5)
P 		357.4
(3)
P 		254
avr 121.2
(-2.9) 		217.7
(-0.1) 		138.4
(-2.4) 		118.4
(-3) 		141
(-2.3) 		322.3
(3) 		204
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187932_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3189
Sequence Type Exemplar sequence
Representative Public ID D2013.8 NCBI
Target Description D2013.8 /REP_DB=WormBase Gene ID /WP=CE17621 /GEN=scp-1 /TR=Q18968 /GB=CAA87777.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026880(11), NM_001026881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026880 NCBI Caenorhabditis elegans SREBP Cleavage activating Protein (SCAP) homolog family member (scp-1) (scp-1) mRNA, complete cds. 11/11 None
NM_001026881 NCBI Caenorhabditis elegans SREBP Cleavage activating Protein (SCAP) homolog family member (scp-1) (scp-1) mRNA, complete cds. 11/11 None
SNAP00000019829 ENSEMBL cdna:SNAP chromosome:CEL140:II:9333965:9338649:1 11/11 None
D2013.8a.2 ENSEMBL cdna:known chromosome:CEL140:II:9333924:9338799:1 gene:D2013.8 11/11 None
D2013.8a.1 ENSEMBL cdna:known chromosome:CEL140:II:9333926:9338799:1 gene:D2013.8 11/11 None
D2013.8b ENSEMBL cdna:known chromosome:CEL140:II:9336795:9338649:1 gene:D2013.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9333961-9338646(+) 100.0 100.0
Public Domain and Genome References
Ensembl D2013.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87777 Hypothetical protein D2013.8a [Caenorhabditis elegans] ref|NP_001022051.1| SREBP Cleavage activating Protein (SCAP) homolog family member (scp-1) [Caenorhabditis elegans] 0.0
blast CAE72907 Hypothetical protein CBG20225 [Caenorhabditis briggsae] 0.0
blast CAI46561 Hypothetical protein D2013.8b [Caenorhabditis elegans] ref|NP_001022052.1| SREBP Cleavage activating Protein (SCAP) homolog family member (scp-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.8E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.8E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.8E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022051.1 5 272-289,301-320,335-357,535-557,668-690
NP_001022052.1 1 7-29
D2013.8a.2 5 272-289,301-320,335-357,535-557,668-690
D2013.8a.1 5 272-289,301-320,335-357,535-557,668-690
D2013.8b 1 7-29
SNAP00000019829 5 272-289,301-320,335-357,535-557,668-690
Sequence
Target Sequence 
>C. ELEGANS:187932_AT
aaaccagtttgtcgaattgcgatttggaaatcccaactgattacgtcttcattcgacaga
agtattaaaatgtggaattgggctgagaatccggagcaaatcgacatttcaaatgttttt
ctggctcacaactctccagttgtcaatctagcagttgatgaggcaacttcaataatgtat
tcgtcgtgtgaagaaggtgtaatttgttggtggaatcttaatacaggagaacttattcga
acaaatgataataattacacgtgggcttttcaacttgccacgtcttcagattatcttctg
ggattctatggatcatctcaattgtatatgtggaatgttgaaaatgggcaattggcatgt
agagtttcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCAGTTTGTCGAATTGCGATTT 461 123 2482 Antisense
CCCAACTGATTACGTCTTCATTCGA 579 257 2513 Antisense
GTGGAATTGGGCTGAGAATCCGGAG 554 491 2553 Antisense
GAATCCGGAGCAAATCGACATTTCA 456 329 2568 Antisense
AAATGTTTTTCTGGCTCACAACTCT 239 121 2592 Antisense
AACTCTCCAGTTGTCAATCTAGCAG 396 141 2611 Antisense
ATTACACGTGGGCTTTTCAACTTGC 335 13 2735 Antisense
TTCAACTTGCCACGTCTTCAGATTA 318 685 2750 Antisense
GCCACGTCTTCAGATTATCTTCTGG 528 279 2758 Antisense
TCTGGGATTCTATGGATCATCTCAA 366 607 2778 Antisense
GGGCAATTGGCATGTAGAGTTTCAG 235 493 2827 Antisense
Sequence Source Affymetrix Proprietary Database