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[187927_at]

Description C50H2.2 /REP_DB=WormBase Gene ID /WP=CE05480 /GEN=gur-1 /TR=Q18760 /GB=CAA98250.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 32      4grp_high_8_8 > 18      6grp_total > 81      4grp_total > 30      6grp_cgc > 84      6grp_high1_sub > 02_03      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 144.6
(3)
P 		113.1
(1.1)
A 		45
(-3)
A 		110.8
(1)
P 		100
B 171.3
(3)
P 		76.6
(-1.4)
M 		42.4
(-3)
A 		126.9
(0.9)
P 		129
C 154.5
(3)
P 		67.9
(-1.5)
P 		38.3
(-3)
P 		140.3
(2.3)
P 		116
avr 156.8
(3) 		85.9
(-0.7) 		41.9
(-3) 		126
(1.4) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 54.6
(-3)
P 		72
(-0.7)
P 		90.3
(1.8)
P 		86.5
(1.3)
P 		99.1
(3)
P 		70.9
(-0.8)
A 		45
B 83.1
(2.7)
P 		85.2
(3)
P 		52.7
(-2.3)
M 		63.7
(-0.5)
P 		58.1
(-1.5)
P 		48.7
(-3)
P 		37
C 81.8
(-0)
P 		93.8
(0.9)
P 		79.1
(-0.2)
P 		122.7
(3)
A 		82.7
(0)
P 		42
(-3)
P 		81
avr 73.2
(0.1) 		83.7
(1.8) 		74
(0.3) 		91
(3) 		80
(1.2) 		53.9
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 52.6
(3)
P 		24.6
(-1.1)
A 		11.8
(-3)
A 		16.2
(-2.4)
P 		41
B 54.6
(3)
P 		18.9
(-1.8)
M 		9.8
(-3)
A 		27
(-0.7)
P 		45
C 51.1
(3)
P 		19.5
(-2)
P 		13.3
(-3)
P 		23.7
(-1.3)
P 		38
avr 52.8
(3) 		21
(-1.6) 		11.6
(-3) 		22.3
(-1.4) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 10.1
(-3)
P 		25.6
(1.7)
P 		19.7
(-0.1)
P 		22
(0.6)
P 		29.9
(3)
P 		17.3
(-0.8)
A 		20
B 28.9
(3)
P 		28.4
(2.8)
P 		12.8
(-3)
M 		16.9
(-1.5)
P 		23.6
(1)
P 		18.2
(-1)
P 		16
C 30.3
(3)
P 		28.6
(2.4)
P 		20.1
(-0.8)
P 		24.7
(0.9)
A 		26.8
(1.7)
P 		14.1
(-3)
P 		16
avr 23.1
(0.6) 		27.5
(3) 		17.5
(-2.5) 		21.2
(-0.4) 		26.8
(2.6) 		16.5
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187927_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11751
Sequence Type Exemplar sequence
Representative Public ID C50H2.2 NCBI
Target Description C50H2.2 /REP_DB=WormBase Gene ID /WP=CE05480 /GEN=gur-1 /TR=Q18760 /GB=CAA98250.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028557(11), NM_001028558(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028557 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-47) (egl-47) mRNA, complete cds. 11/11 None
NM_001028558 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-47) (egl-47) mRNA, complete cds. 11/11 None
SNAP00000033464 ENSEMBL cdna:SNAP chromosome:CEL140:V:9908239:9910078:1 11/11 None
GENEFINDER00000033479 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9908973:9910078:1 11/11 None
C50H2.2a ENSEMBL cdna:known chromosome:CEL140:V:9902169:9910202:1 gene:C50H2.2 11/11 None
C50H2.2b ENSEMBL cdna:known chromosome:CEL140:V:9907599:9910078:1 gene:C50H2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9907598-9910078(+) 100.0 100.0
Public Domain and Genome References
Ensembl C50H2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04730 Hypothetical protein C50H2.2a [Caenorhabditis elegans] gb|AAS21318.1| egg laying defective EGL-47A [Caenorhabditis elegans] ref|NP_001023728.1| EGg Laying defective family member (egl-47) [Caenorhabditis elegans] 0.0
blast CAA98250 Hypothetical protein C50H2.2b [Caenorhabditis elegans] ref|NP_001023729.1| EGg Laying defective family member (egl-47) [Caenorhabditis elegans] 0.0
blast CAA98250 Hypothetical protein C50H2.2b [Caenorhabditis elegans] ref|NP_001023729.1| EGg Laying defective family member (egl-47) [Caenorhabditis elegans] 1.0E-177
blast CAH04730 Hypothetical protein C50H2.2a [Caenorhabditis elegans] gb|AAS21318.1| egg laying defective EGL-47A [Caenorhabditis elegans] ref|NP_001023728.1| EGg Laying defective family member (egl-47) [Caenorhabditis elegans] 1.0E-177
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023728.1 7 139-161,181-203,239-261,276-298,342-364,400-422,470-492
NP_001023729.1 7 105-127,147-169,205-227,242-264,308-330,366-388,436-458
C50H2.2a 7 139-161,181-203,239-261,276-298,342-364,400-422,470-492
C50H2.2b 7 105-127,147-169,205-227,242-264,308-330,366-388,436-458
SNAP00000033464 6 20-41,76-98,113-135,179-201,237-259,311-333
GENEFINDER00000033479 5 21-43,63-85,128-150,186-208,256-278
Sequence
Target Sequence 
>C. ELEGANS:187927_AT
agacgttttcaatccacttcttttgttctctctggcatggagtcttttggttctgtgtct
tactttatatttcctttcggaaccaacttctactttgctagttccaatcactccagagca
agtcactaatccaaaaattcgagagaagttaaacataacagttcatgttaaaatatgttg
ggctgcttatcaagttgtcatggctattcttcacattataattatttgctcaactggtat
gatgactaatgagacgacccgtcaaatagtcaacgcagttctccgaatcgttcctgatgc
aaacgccgacctcgaccgttttcaaatctcctgctttgttcacaaaatgacaactcagtt
tatgtggggaatgactgtttggagagcattcccacttgaaagaactacttttttcacact
aatatcagtaattgttacatactcccttctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACGTTTTCAATCCACTTCTTTTG 216 61 930 Antisense
TTCTTTTGTTCTCTCTGGCATGGAG 176 691 947 Antisense
TGGCATGGAGTCTTTTGGTTCTGTG 24 547 962 Antisense
GTGTCTTACTTTATATTTCCTTTCG 141 487 984 Antisense
TTCGGAACCAACTTCTACTTTGCTA 78 677 1005 Antisense
TACTTTGCTAGTTCCAATCACTCCA 329 645 1020 Antisense
AGTTGTCATGGCTATTCTTCACATT 32 65 1122 Antisense
GTTCTCCGAATCGTTCCTGATGCAA 261 443 1207 Antisense
TTCAAATCTCCTGCTTTGTTCACAA 119 687 1250 Antisense
GACTGTTTGGAGAGCATTCCCACTT 452 375 1302 Antisense
GTAATTGTTACATACTCCCTTCTGT 147 461 1357 Antisense
Sequence Source Affymetrix Proprietary Database