[Home] | [Total List]

[187926_s_at]

Description F56G4.2 /REP_DB=WormBase Gene ID /WP=CE18757 /GEN=pes-2 /TR=Q27347 /GB=CAB04484.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 18      6grp_cgc > 49      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 46.9
(-3)
A 		89.5
(-0.6)
A 		61.6
(-2.2)
A 		151.3
(3)
P 		104
B 81.6
(-2.5)
A 		92
(-1.9)
A 		71.1
(-3)
A 		185.7
(3)
P 		115
C 77.1
(-2.8)
A 		116.9
(-1.4)
A 		72.9
(-3)
A 		233.4
(3)
P 		161
avr 68.5
(-3) 		99.5
(-1.5) 		68.5
(-3) 		190.1
(3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1495
1 2 3 4 5 6 range
A 188.3
(-2.3)
P 		70.9
(-2.9)
A 		67.7
(-2.9)
A 		47.8
(-3)
A 		308.4
(-1.7)
P 		1247.7
(3)
P 		1200
B 182.3
(-2.5)
P 		73
(-2.9)
A 		52.5
(-3)
A 		74
(-2.9)
M 		312.8
(-1.9)
P 		1521.5
(3)
P 		1469
C 179.3
(-2.3)
P 		120.6
(-2.6)
P 		135.9
(-2.5)
A 		26.3
(-3)
A 		343.8
(-1.6)
P 		1434.7
(3)
P 		1408
avr 183.3
(-2.4) 		88.2
(-2.8) 		85.4
(-2.8) 		49.4
(-3) 		321.7
(-1.8) 		1401.3
(3) 		1352
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 17.1
(-2)
A 		19.4
(0.3)
A 		16.1
(-3)
A 		22.1
(3)
P 		6
B 26
(-0.5)
A 		22.7
(-1.4)
A 		16.5
(-3)
A 		39.6
(3)
P 		23
C 25.5
(-3)
A 		33.6
(0.5)
A 		25.4
(-3)
A 		39.4
(3)
P 		14
avr 22.9
(-1.5) 		25.2
(-0.5) 		19.3
(-3) 		33.7
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 562
1 2 3 4 5 6 range
A 34.7
(-2.5)
P 		25.2
(-2.7)
A 		14.7
(-2.9)
A 		12.1
(-3)
A 		93.1
(-1.3)
P 		303.8
(3)
P 		292
B 63.4
(-2.5)
P 		24.3
(-2.9)
A 		12.7
(-3)
A 		19.6
(-2.9)
M 		127.1
(-1.8)
P 		567.4
(3)
P 		555
C 66.5
(-2.2)
P 		36.8
(-2.6)
P 		34.6
(-2.6)
A 		5.3
(-3)
A 		111.3
(-1.7)
P 		480.3
(3)
P 		475
avr 54.9
(-2.4) 		28.8
(-2.8) 		20.7
(-2.9) 		12.3
(-3) 		110.5
(-1.7) 		450.5
(3) 		438
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187926_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1139
Sequence Type Exemplar sequence
Representative Public ID F56G4.2 NCBI
Target Description F56G4.2 /REP_DB=WormBase Gene ID /WP=CE18757 /GEN=pes-2 /TR=Q27347 /GB=CAB04484.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060508(11), NM_060509(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060508 NCBI Caenorhabditis elegans Patterned Expression Site family member (pes-2) (pes-2) mRNA, complete cds. 11/11 None
NM_060509 NCBI Caenorhabditis elegans F56G4.3 (F56G4.3) mRNA, complete cds. 11/11 None
SNAP00000039527 ENSEMBL cdna:SNAP chromosome:CEL140:I:11363360:11364494:1 11/11 None
GENEFINDER00000039537 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11363360:11364494:1 11/11 None
SNAP00000039528 ENSEMBL cdna:SNAP chromosome:CEL140:I:11366291:11367425:-1 11/11 None
GENEFINDER00000039536 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11366291:11367425:-1 11/11 None
F56G4.2 ENSEMBL cdna:known chromosome:CEL140:I:11363360:11364494:1 gene:F56G4.2 11/11 None
F56G4.3 ENSEMBL cdna:known chromosome:CEL140:I:11366291:11367425:-1 gene:F56G4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11363290-11364425(+) 100.0 100.0
chrI:11366221-11367356(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol pes-2
Ensembl F56G4.2
F56G4.3
Entrez Gene 173025 Entrez gene
173026 Entrez gene
SwissProt Q27347 EMBL-EBI
WormBase CE18757 Wormbase
CE18757 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04485 Hypothetical protein F56G4.3 [Caenorhabditis elegans] emb|CAB04484.1| Hypothetical protein F56G4.2 [Caenorhabditis elegans] ref|NP_492910.1| F56G4.3 [Caenorhabditis elegans] ref|NP_492909.1| Patterned Expression Site family member (pes-2) [Caenorhabditis elegans] emb|CAA64363.1| pes-2 [Caenorhabditis elegans] emb|CAA64362.1| pes-2 [Caenorhabditis elegans] 0.0
blast CAI79202 Hypothetical protein F56G4.7 [Caenorhabditis elegans] ref|NP_001021510.1| F56G4.7 [Caenorhabditis elegans] 6.0E-35
Sequence
Target Sequence 
>C. ELEGANS:187926_S_AT
catctacacccttgggctcggagagtttgaatctgttactcttggacaggagaaccatgc
tggaaggatcattgactgggccaatgagaagaatctcaacattgccaacttcaccatcgg
aaacgtcgataaggaacatgacgacgtcgataaggttgctgagaagctgtactcggcttc
attcttcaagaaggtctctgccaacttcaagtgtctcatcaatccaaccgaagctttcaa
accaaatgagttccttcccggaatcccaaagaataccaacatgatcttcttccacggagc
tcactggatgactattgacactctcaaggatttcactgcttgctctgtaattctttatga
ttgtaaattcacaaataaggatatcaacgagtttatcaaattgtggaagaataaggaatt
tgaaagaatcttctacatctccatcaatgttccacaaggaagcggattcaagttgacgga
ggttattgcaggattagatggattcggagaaatcgaaaacgacgctaccacaatgaaaag
agaggatggaaaggaaatcgaagtctctgttcttgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCTACACCCTTGGGCTCGGAGAG 97 213 399 Antisense
AGAATCTCAACATTGCCAACTTCAC 496 75 488 Antisense
CCAACTTCACCATCGGAAACGTCGA 71 269 503 Antisense
TGTACTCGGCTTCATTCTTCAAGAA 649 559 566 Antisense
TCTTCAAGAAGGTCTCTGCCAACTT 55 615 581 Antisense
TCAAGTGTCTCATCAATCCAACCGA 138 633 605 Antisense
AATACCAACATGATCTTCTTCCACG 246 173 670 Antisense
TTCTTCCACGGAGCTCACTGGATGA 154 689 685 Antisense
GACACTCTCAAGGATTTCACTGCTT 526 367 715 Antisense
CGAAAACGACGCTACCACAATGAAA 406 249 912 Antisense
GAAATCGAAGTCTCTGTTCTTGACG 245 359 952 Antisense
Sequence Source Affymetrix Proprietary Database