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[187925_at]

Description ZK6.7 /REP_DB=WormBase Gene ID /WP=CE18444 /TR=O61866 /GB=AAG45574.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=lipase
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 25      6grp_total > 62      4grp_total > 57      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3437
1 2 3 4 range
A 2144.7
(-3)
P 		4723.6
(1.8)
P 		5402.5
(3)
P 		2122.7
(-3)
P 		3280
B 2207.2
(-2.7)
P 		4302.9
(1)
P 		5394.2
(3)
P 		2056.2
(-3)
P 		3338
C 2058.1
(-2.8)
P 		4597.8
(2.7)
P 		4738.8
(3)
P 		1965.8
(-3)
P 		2773
avr 2136.7
(-2.8) 		4541.4
(1.8) 		5178.5
(3) 		2048.2
(-3) 		3130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4579
1 2 3 4 5 6 range
A 2357.8
(-3)
P 		2906.9
(-2.2)
P 		6358.3
(3)
P 		5630.5
(1.9)
P 		4486.4
(0.2)
P 		3150.5
(-1.8)
P 		4001
B 2371.9
(-3)
P 		2880.4
(-2.2)
P 		6037.2
(3)
P 		5034.3
(1.4)
P 		3844.1
(-0.6)
P 		2673.8
(-2.5)
P 		3665
C 2361.3
(-3)
P 		2723.8
(-2.5)
P 		6936.3
(3)
P 		4986.8
(0.4)
P 		4172.8
(-0.6)
P 		2443.7
(-2.9)
P 		4575
avr 2363.7
(-3) 		2837
(-2.3) 		6443.9
(3) 		5217.2
(1.2) 		4167.8
(-0.3) 		2756
(-2.4) 		4080
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1341
1 2 3 4 range
A 780.9
(-0.4)
P 		1025.4
(0.9)
P 		1412.3
(3)
P 		310.7
(-3)
P 		1102
B 703.9
(-1)
P 		1062.7
(1.6)
P 		1250
(3)
P 		438.2
(-3)
P 		812
C 681.3
(-1.4)
P 		1321.9
(1.5)
P 		1651.6
(3)
P 		331.5
(-3)
P 		1320
avr 722
(-1) 		1136.7
(1.3) 		1438
(3) 		360.1
(-3) 		1078

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1331
1 2 3 4 5 6 range
A 434.6
(-3)
P 		1033.8
(0.6)
P 		1384.7
(2.7)
P 		1428
(3)
P 		1353.8
(2.6)
P 		767.1
(-1)
P 		993
B 825.3
(-3)
P 		958.8
(-1.9)
P 		1466
(2.2)
P 		1333.4
(1.1)
P 		1561.8
(3)
P 		997
(-1.6)
P 		737
C 875.2
(-2.6)
P 		831.1
(-2.9)
P 		1765.4
(3)
P 		1002.9
(-1.8)
P 		1350.2
(0.4)
P 		818
(-3)
P 		947
avr 711.7
(-3) 		941.2
(-1.3) 		1538.7
(3) 		1254.8
(0.9) 		1421.9
(2.2) 		860.7
(-1.9) 		827
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187925_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15502
Sequence Type Exemplar sequence
Representative Public ID ZK6.7 NCBI
Target Description ZK6.7 /REP_DB=WormBase Gene ID /WP=CE18444 /TR=O61866 /GB=AAG45574.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=lipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070784(10), NM_070783(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070784 NCBI Caenorhabditis elegans ZK6.7b (lipase) mRNA, complete cds. 10/11 None
NM_070783 NCBI Caenorhabditis elegans ZK6.7a (lipase) mRNA, complete cds. 11/11 None
SNAP00000041435 ENSEMBL cdna:SNAP chromosome:CEL140:V:385581:387525:1 11/11 None
GENEFINDER00000041449 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:385581:387525:1 11/11 None
ZK6.7b ENSEMBL cdna:known chromosome:CEL140:V:385566:387556:1 gene:ZK6.7 10/11 None
ZK6.7a ENSEMBL cdna:known chromosome:CEL140:V:385581:387919:1 gene:ZK6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:385580-387525(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK6.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL11486 Hypothetical protein ZK6.7b [Caenorhabditis elegans] ref|NP_503185.1| ZK6.7b [Caenorhabditis elegans] 0.0
blast AAG45574 Hypothetical protein ZK6.7a [Caenorhabditis elegans] ref|NP_503184.1| ZK6.7a [Caenorhabditis elegans] 0.0
blast CAE58265 Hypothetical protein CBG01370 [Caenorhabditis briggsae] 0.0
blast CAE65482 Hypothetical protein CBG10449 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006693 EMBL-EBI Ab-hydrolase associated lipase region 2.6E-47
Sequence
Target Sequence 
>C. ELEGANS:187925_AT
tgtcattcttcgctaactatttctcgttggagtttgatggatggttcgatatcttcggag
ccggcgaattcctcccaaacaactgggccatgaagctagccgccaaggacatttgcggag
ggctcaaagttgaagccgacctctgcgacaacgtcctattcctcatcgccggcccggaaa
gtgaccaatggaaccagacacgtgttccagtctacgctactcatgatccagcggggactt
cgactcagaacattgtccactggatgcagatggtgcatcatggaggcgttccggcgtacg
actggggaaccaagacgaacaagaagaaatatggacaggctaatcccccagagtacgact
ttaccgctatcaagggaaccaagatttacctctactggagtgatgccgattggttggctg
atacgcctgacgtgcctgactacctactgactagattgaacccggcaattgtcgctcaaa
acaatcatcttcccgactacaatcatttggacttcacatggggactacgcgctcctgatg
atatttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCATTCTTCGCTAACTATTTCTC 350 559 632 Antisense
ATGGTTCGATATCTTCGGAGCCGGC 167 51 672 Antisense
CAACTGGGCCATGAAGCTAGCCGCC 632 187 711 Antisense
TCAAAGTTGAAGCCGACCTCTGCGA 152 629 755 Antisense
CTCATCGCCGGCCCGGAAAGTGACC 212 229 793 Antisense
GAACCAGACACGTGTTCCAGTCTAC 548 345 822 Antisense
TCATGATCCAGCGGGGACTTCGACT 629 621 852 Antisense
AATATGGACAGGCTAATCCCCCAGA 550 169 959 Antisense
TGCCTGACTACCTACTGACTAGATT 303 583 1064 Antisense
TCATCTTCCCGACTACAATCATTTG 662 619 1116 Antisense
ACTACGCGCTCCTGATGATATTTAT 631 101 1155 Antisense
Sequence Source Affymetrix Proprietary Database